42 lines
1.2 KiB
Makefile
42 lines
1.2 KiB
Makefile
PORTNAME= abyss
|
|
DISTVERSION= 2.3.1
|
|
PORTREVISION= 1
|
|
CATEGORIES= biology
|
|
|
|
MAINTAINER= yuri@FreeBSD.org
|
|
COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler
|
|
|
|
LICENSE= GPLv3
|
|
LICENSE_FILE= ${WRKSRC}/LICENSE
|
|
|
|
BROKEN_i386= result of comparison of constant 18446744073709551615 with expression of type 'size_t', see https://github.com/bcgsc/abyss/issues/310
|
|
|
|
BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \
|
|
ghc:lang/ghc \
|
|
pandoc:textproc/hs-pandoc # pandoc is required just for one man page: abyss-sealer
|
|
LIB_DEPENDS= libffi.so:devel/libffi \
|
|
libgmp.so:math/gmp
|
|
RUN_DEPENDS= bash:shells/bash \
|
|
gmake:devel/gmake
|
|
|
|
USES= autoreconf compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite
|
|
|
|
USE_GITHUB= yes
|
|
GH_ACCOUNT= bcgsc
|
|
|
|
SHEBANG_FILES= bin/${PORTNAME}-* DataBase/abyss-db-txt
|
|
SHEBANG_LANG= make
|
|
make_OLD_CMD= /usr/bin/make
|
|
make_CMD= ${PREFIX}/bin/gmake
|
|
|
|
GNU_CONFIGURE= yes
|
|
CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
PORTDOCS= *
|
|
|
|
PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
|
|
|
|
.include <bsd.port.mk>
|