opnsense-ports/biology/p5-BioPerl/pkg-plist

1078 lines
43 KiB
Plaintext

bin/bp_aacomp
bin/bp_bioflat_index
bin/bp_biogetseq
bin/bp_chaos_plot
bin/bp_dbsplit
bin/bp_extract_feature_seq
bin/bp_fastam9_to_table
bin/bp_fetch
bin/bp_filter_search
bin/bp_find-blast-matches
bin/bp_gccalc
bin/bp_genbank2gff3
bin/bp_index
bin/bp_local_taxonomydb_query
bin/bp_make_mrna_protein
bin/bp_mask_by_search
bin/bp_mrtrans
bin/bp_mutate
bin/bp_nexus2nh
bin/bp_nrdb
bin/bp_oligo_count
bin/bp_process_gadfly
bin/bp_process_sgd
bin/bp_revtrans-motif
bin/bp_search2alnblocks
bin/bp_search2gff
bin/bp_search2table
bin/bp_search2tribe
bin/bp_seq_length
bin/bp_seqconvert
bin/bp_seqcut
bin/bp_seqpart
bin/bp_seqret
bin/bp_seqretsplit
bin/bp_split_seq
bin/bp_sreformat
bin/bp_taxid4species
bin/bp_taxonomy2tree
bin/bp_translate_seq
bin/bp_tree2pag
bin/bp_unflatten_seq
%%SITE_PERL%%/Bio/Align/AlignI.pm
%%SITE_PERL%%/Bio/Align/DNAStatistics.pm
%%SITE_PERL%%/Bio/Align/PairwiseStatistics.pm
%%SITE_PERL%%/Bio/Align/ProteinStatistics.pm
%%SITE_PERL%%/Bio/Align/StatisticsI.pm
%%SITE_PERL%%/Bio/Align/Utilities.pm
%%SITE_PERL%%/Bio/AlignIO.pm
%%SITE_PERL%%/Bio/AlignIO/Handler/GenericAlignHandler.pm
%%SITE_PERL%%/Bio/AlignIO/arp.pm
%%SITE_PERL%%/Bio/AlignIO/bl2seq.pm
%%SITE_PERL%%/Bio/AlignIO/clustalw.pm
%%SITE_PERL%%/Bio/AlignIO/emboss.pm
%%SITE_PERL%%/Bio/AlignIO/fasta.pm
%%SITE_PERL%%/Bio/AlignIO/largemultifasta.pm
%%SITE_PERL%%/Bio/AlignIO/maf.pm
%%SITE_PERL%%/Bio/AlignIO/mase.pm
%%SITE_PERL%%/Bio/AlignIO/mega.pm
%%SITE_PERL%%/Bio/AlignIO/meme.pm
%%SITE_PERL%%/Bio/AlignIO/metafasta.pm
%%SITE_PERL%%/Bio/AlignIO/msf.pm
%%SITE_PERL%%/Bio/AlignIO/nexus.pm
%%SITE_PERL%%/Bio/AlignIO/pfam.pm
%%SITE_PERL%%/Bio/AlignIO/phylip.pm
%%SITE_PERL%%/Bio/AlignIO/po.pm
%%SITE_PERL%%/Bio/AlignIO/proda.pm
%%SITE_PERL%%/Bio/AlignIO/prodom.pm
%%SITE_PERL%%/Bio/AlignIO/psi.pm
%%SITE_PERL%%/Bio/AlignIO/selex.pm
%%SITE_PERL%%/Bio/AlignIO/xmfa.pm
%%SITE_PERL%%/Bio/AnalysisI.pm
%%SITE_PERL%%/Bio/AnalysisParserI.pm
%%SITE_PERL%%/Bio/AnalysisResultI.pm
%%SITE_PERL%%/Bio/AnnotatableI.pm
%%SITE_PERL%%/Bio/Annotation/AnnotationFactory.pm
%%SITE_PERL%%/Bio/Annotation/Collection.pm
%%SITE_PERL%%/Bio/Annotation/Comment.pm
%%SITE_PERL%%/Bio/Annotation/DBLink.pm
%%SITE_PERL%%/Bio/Annotation/OntologyTerm.pm
%%SITE_PERL%%/Bio/Annotation/Reference.pm
%%SITE_PERL%%/Bio/Annotation/Relation.pm
%%SITE_PERL%%/Bio/Annotation/SimpleValue.pm
%%SITE_PERL%%/Bio/Annotation/StructuredValue.pm
%%SITE_PERL%%/Bio/Annotation/TagTree.pm
%%SITE_PERL%%/Bio/Annotation/Target.pm
%%SITE_PERL%%/Bio/Annotation/Tree.pm
%%SITE_PERL%%/Bio/Annotation/TypeManager.pm
%%SITE_PERL%%/Bio/AnnotationCollectionI.pm
%%SITE_PERL%%/Bio/AnnotationI.pm
%%SITE_PERL%%/Bio/CodonUsage/IO.pm
%%SITE_PERL%%/Bio/CodonUsage/Table.pm
%%SITE_PERL%%/Bio/DB/DBFetch.pm
%%SITE_PERL%%/Bio/DB/Failover.pm
%%SITE_PERL%%/Bio/DB/Fasta.pm
%%SITE_PERL%%/Bio/DB/FileCache.pm
%%SITE_PERL%%/Bio/DB/Flat.pm
%%SITE_PERL%%/Bio/DB/Flat/BDB.pm
%%SITE_PERL%%/Bio/DB/Flat/BDB/embl.pm
%%SITE_PERL%%/Bio/DB/Flat/BDB/fasta.pm
%%SITE_PERL%%/Bio/DB/Flat/BDB/genbank.pm
%%SITE_PERL%%/Bio/DB/Flat/BDB/swiss.pm
%%SITE_PERL%%/Bio/DB/Flat/BinarySearch.pm
%%SITE_PERL%%/Bio/DB/GFF/Util/Binning.pm
%%SITE_PERL%%/Bio/DB/GFF/Util/Rearrange.pm
%%SITE_PERL%%/Bio/DB/GenericWebAgent.pm
%%SITE_PERL%%/Bio/DB/InMemoryCache.pm
%%SITE_PERL%%/Bio/DB/IndexedBase.pm
%%SITE_PERL%%/Bio/DB/LocationI.pm
%%SITE_PERL%%/Bio/DB/Qual.pm
%%SITE_PERL%%/Bio/DB/Query/WebQuery.pm
%%SITE_PERL%%/Bio/DB/QueryI.pm
%%SITE_PERL%%/Bio/DB/RandomAccessI.pm
%%SITE_PERL%%/Bio/DB/ReferenceI.pm
%%SITE_PERL%%/Bio/DB/Registry.pm
%%SITE_PERL%%/Bio/DB/SeqI.pm
%%SITE_PERL%%/Bio/DB/Taxonomy.pm
%%SITE_PERL%%/Bio/DB/Taxonomy/flatfile.pm
%%SITE_PERL%%/Bio/DB/Taxonomy/greengenes.pm
%%SITE_PERL%%/Bio/DB/Taxonomy/list.pm
%%SITE_PERL%%/Bio/DB/Taxonomy/silva.pm
%%SITE_PERL%%/Bio/DB/UpdateableSeqI.pm
%%SITE_PERL%%/Bio/DB/WebDBSeqI.pm
%%SITE_PERL%%/Bio/DBLinkContainerI.pm
%%SITE_PERL%%/Bio/Das/FeatureTypeI.pm
%%SITE_PERL%%/Bio/Das/SegmentI.pm
%%SITE_PERL%%/Bio/DasI.pm
%%SITE_PERL%%/Bio/DescribableI.pm
%%SITE_PERL%%/Bio/Event/EventGeneratorI.pm
%%SITE_PERL%%/Bio/Event/EventHandlerI.pm
%%SITE_PERL%%/Bio/Factory/AnalysisI.pm
%%SITE_PERL%%/Bio/Factory/ApplicationFactoryI.pm
%%SITE_PERL%%/Bio/Factory/DriverFactory.pm
%%SITE_PERL%%/Bio/Factory/FTLocationFactory.pm
%%SITE_PERL%%/Bio/Factory/LocationFactoryI.pm
%%SITE_PERL%%/Bio/Factory/ObjectBuilderI.pm
%%SITE_PERL%%/Bio/Factory/ObjectFactory.pm
%%SITE_PERL%%/Bio/Factory/ObjectFactoryI.pm
%%SITE_PERL%%/Bio/Factory/SeqAnalysisParserFactory.pm
%%SITE_PERL%%/Bio/Factory/SeqAnalysisParserFactoryI.pm
%%SITE_PERL%%/Bio/Factory/SequenceFactoryI.pm
%%SITE_PERL%%/Bio/Factory/SequenceProcessorI.pm
%%SITE_PERL%%/Bio/Factory/SequenceStreamI.pm
%%SITE_PERL%%/Bio/Factory/TreeFactoryI.pm
%%SITE_PERL%%/Bio/FeatureHolderI.pm
%%SITE_PERL%%/Bio/HandlerBaseI.pm
%%SITE_PERL%%/Bio/IdCollectionI.pm
%%SITE_PERL%%/Bio/IdentifiableI.pm
%%SITE_PERL%%/Bio/Index/Abstract.pm
%%SITE_PERL%%/Bio/Index/AbstractSeq.pm
%%SITE_PERL%%/Bio/Index/Blast.pm
%%SITE_PERL%%/Bio/Index/BlastTable.pm
%%SITE_PERL%%/Bio/Index/EMBL.pm
%%SITE_PERL%%/Bio/Index/Fasta.pm
%%SITE_PERL%%/Bio/Index/Fastq.pm
%%SITE_PERL%%/Bio/Index/GenBank.pm
%%SITE_PERL%%/Bio/Index/Qual.pm
%%SITE_PERL%%/Bio/Index/SwissPfam.pm
%%SITE_PERL%%/Bio/Index/Swissprot.pm
%%SITE_PERL%%/Bio/LocatableSeq.pm
%%SITE_PERL%%/Bio/Location/Atomic.pm
%%SITE_PERL%%/Bio/Location/AvWithinCoordPolicy.pm
%%SITE_PERL%%/Bio/Location/CoordinatePolicyI.pm
%%SITE_PERL%%/Bio/Location/Fuzzy.pm
%%SITE_PERL%%/Bio/Location/FuzzyLocationI.pm
%%SITE_PERL%%/Bio/Location/NarrowestCoordPolicy.pm
%%SITE_PERL%%/Bio/Location/Simple.pm
%%SITE_PERL%%/Bio/Location/Split.pm
%%SITE_PERL%%/Bio/Location/SplitLocationI.pm
%%SITE_PERL%%/Bio/Location/WidestCoordPolicy.pm
%%SITE_PERL%%/Bio/LocationI.pm
%%SITE_PERL%%/Bio/Matrix/Generic.pm
%%SITE_PERL%%/Bio/Matrix/IO.pm
%%SITE_PERL%%/Bio/Matrix/IO/mlagan.pm
%%SITE_PERL%%/Bio/Matrix/IO/phylip.pm
%%SITE_PERL%%/Bio/Matrix/IO/scoring.pm
%%SITE_PERL%%/Bio/Matrix/MatrixI.pm
%%SITE_PERL%%/Bio/Matrix/Mlagan.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO/mast.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO/masta.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO/meme.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO/psiblast.pm
%%SITE_PERL%%/Bio/Matrix/PSM/IO/transfac.pm
%%SITE_PERL%%/Bio/Matrix/PSM/InstanceSite.pm
%%SITE_PERL%%/Bio/Matrix/PSM/InstanceSiteI.pm
%%SITE_PERL%%/Bio/Matrix/PSM/ProtMatrix.pm
%%SITE_PERL%%/Bio/Matrix/PSM/ProtPsm.pm
%%SITE_PERL%%/Bio/Matrix/PSM/Psm.pm
%%SITE_PERL%%/Bio/Matrix/PSM/PsmHeader.pm
%%SITE_PERL%%/Bio/Matrix/PSM/PsmHeaderI.pm
%%SITE_PERL%%/Bio/Matrix/PSM/PsmI.pm
%%SITE_PERL%%/Bio/Matrix/PSM/SiteMatrix.pm
%%SITE_PERL%%/Bio/Matrix/PSM/SiteMatrixI.pm
%%SITE_PERL%%/Bio/Matrix/PhylipDist.pm
%%SITE_PERL%%/Bio/Matrix/Scoring.pm
%%SITE_PERL%%/Bio/Ontology/DocumentRegistry.pm
%%SITE_PERL%%/Bio/Ontology/GOterm.pm
%%SITE_PERL%%/Bio/Ontology/InterProTerm.pm
%%SITE_PERL%%/Bio/Ontology/OBOEngine.pm
%%SITE_PERL%%/Bio/Ontology/OBOterm.pm
%%SITE_PERL%%/Bio/Ontology/Ontology.pm
%%SITE_PERL%%/Bio/Ontology/OntologyEngineI.pm
%%SITE_PERL%%/Bio/Ontology/OntologyI.pm
%%SITE_PERL%%/Bio/Ontology/OntologyStore.pm
%%SITE_PERL%%/Bio/Ontology/Path.pm
%%SITE_PERL%%/Bio/Ontology/PathI.pm
%%SITE_PERL%%/Bio/Ontology/Relationship.pm
%%SITE_PERL%%/Bio/Ontology/RelationshipFactory.pm
%%SITE_PERL%%/Bio/Ontology/RelationshipI.pm
%%SITE_PERL%%/Bio/Ontology/RelationshipType.pm
%%SITE_PERL%%/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
%%SITE_PERL%%/Bio/Ontology/SimpleOntologyEngine.pm
%%SITE_PERL%%/Bio/Ontology/Term.pm
%%SITE_PERL%%/Bio/Ontology/TermFactory.pm
%%SITE_PERL%%/Bio/Ontology/TermI.pm
%%SITE_PERL%%/Bio/OntologyIO.pm
%%SITE_PERL%%/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
%%SITE_PERL%%/Bio/OntologyIO/Handlers/InterProHandler.pm
%%SITE_PERL%%/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
%%SITE_PERL%%/Bio/OntologyIO/InterProParser.pm
%%SITE_PERL%%/Bio/OntologyIO/dagflat.pm
%%SITE_PERL%%/Bio/OntologyIO/goflat.pm
%%SITE_PERL%%/Bio/OntologyIO/obo.pm
%%SITE_PERL%%/Bio/OntologyIO/simplehierarchy.pm
%%SITE_PERL%%/Bio/OntologyIO/soflat.pm
%%SITE_PERL%%/Bio/ParameterBaseI.pm
%%SITE_PERL%%/Bio/PrimarySeq.pm
%%SITE_PERL%%/Bio/PrimarySeqI.pm
%%SITE_PERL%%/Bio/PullParserI.pm
%%SITE_PERL%%/Bio/Range.pm
%%SITE_PERL%%/Bio/RangeI.pm
%%SITE_PERL%%/Bio/Root/Exception.pm
%%SITE_PERL%%/Bio/Root/HTTPget.pm
%%SITE_PERL%%/Bio/Root/IO.pm
%%SITE_PERL%%/Bio/Root/Root.pm
%%SITE_PERL%%/Bio/Root/RootI.pm
%%SITE_PERL%%/Bio/Root/Storable.pm
%%SITE_PERL%%/Bio/Root/Test.pm
%%SITE_PERL%%/Bio/Root/TestObject.pm
%%SITE_PERL%%/Bio/Root/Utilities.pm
%%SITE_PERL%%/Bio/Root/Version.pm
%%SITE_PERL%%/Bio/Search/BlastStatistics.pm
%%SITE_PERL%%/Bio/Search/BlastUtils.pm
%%SITE_PERL%%/Bio/Search/DatabaseI.pm
%%SITE_PERL%%/Bio/Search/GenericDatabase.pm
%%SITE_PERL%%/Bio/Search/GenericStatistics.pm
%%SITE_PERL%%/Bio/Search/HSP/BlastHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/BlastPullHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/FastaHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/GenericHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/HSPFactory.pm
%%SITE_PERL%%/Bio/Search/HSP/HSPI.pm
%%SITE_PERL%%/Bio/Search/HSP/ModelHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/PSLHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/PsiBlastHSP.pm
%%SITE_PERL%%/Bio/Search/HSP/PullHSPI.pm
%%SITE_PERL%%/Bio/Search/HSP/WABAHSP.pm
%%SITE_PERL%%/Bio/Search/Hit/BlastHit.pm
%%SITE_PERL%%/Bio/Search/Hit/BlastPullHit.pm
%%SITE_PERL%%/Bio/Search/Hit/Fasta.pm
%%SITE_PERL%%/Bio/Search/Hit/GenericHit.pm
%%SITE_PERL%%/Bio/Search/Hit/HitFactory.pm
%%SITE_PERL%%/Bio/Search/Hit/HitI.pm
%%SITE_PERL%%/Bio/Search/Hit/ModelHit.pm
%%SITE_PERL%%/Bio/Search/Hit/PsiBlastHit.pm
%%SITE_PERL%%/Bio/Search/Hit/PullHitI.pm
%%SITE_PERL%%/Bio/Search/Iteration/GenericIteration.pm
%%SITE_PERL%%/Bio/Search/Iteration/IterationI.pm
%%SITE_PERL%%/Bio/Search/Processor.pm
%%SITE_PERL%%/Bio/Search/Result/BlastPullResult.pm
%%SITE_PERL%%/Bio/Search/Result/BlastResult.pm
%%SITE_PERL%%/Bio/Search/Result/CrossMatchResult.pm
%%SITE_PERL%%/Bio/Search/Result/GenericResult.pm
%%SITE_PERL%%/Bio/Search/Result/INFERNALResult.pm
%%SITE_PERL%%/Bio/Search/Result/PullResultI.pm
%%SITE_PERL%%/Bio/Search/Result/ResultFactory.pm
%%SITE_PERL%%/Bio/Search/Result/ResultI.pm
%%SITE_PERL%%/Bio/Search/Result/WABAResult.pm
%%SITE_PERL%%/Bio/Search/SearchUtils.pm
%%SITE_PERL%%/Bio/Search/StatisticsI.pm
%%SITE_PERL%%/Bio/Search/Tiling/MapTileUtils.pm
%%SITE_PERL%%/Bio/Search/Tiling/MapTiling.pm
%%SITE_PERL%%/Bio/Search/Tiling/TilingI.pm
%%SITE_PERL%%/Bio/SearchIO.pm
%%SITE_PERL%%/Bio/SearchIO/EventHandlerI.pm
%%SITE_PERL%%/Bio/SearchIO/FastHitEventBuilder.pm
%%SITE_PERL%%/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
%%SITE_PERL%%/Bio/SearchIO/SearchResultEventBuilder.pm
%%SITE_PERL%%/Bio/SearchIO/SearchWriterI.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/GbrowseGFF.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/HSPTableWriter.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/HTMLResultWriter.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/HitTableWriter.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/ResultTableWriter.pm
%%SITE_PERL%%/Bio/SearchIO/Writer/TextResultWriter.pm
%%SITE_PERL%%/Bio/SearchIO/axt.pm
%%SITE_PERL%%/Bio/SearchIO/blast.pm
%%SITE_PERL%%/Bio/SearchIO/blast_pull.pm
%%SITE_PERL%%/Bio/SearchIO/blasttable.pm
%%SITE_PERL%%/Bio/SearchIO/cross_match.pm
%%SITE_PERL%%/Bio/SearchIO/erpin.pm
%%SITE_PERL%%/Bio/SearchIO/exonerate.pm
%%SITE_PERL%%/Bio/SearchIO/fasta.pm
%%SITE_PERL%%/Bio/SearchIO/gmap_f9.pm
%%SITE_PERL%%/Bio/SearchIO/infernal.pm
%%SITE_PERL%%/Bio/SearchIO/megablast.pm
%%SITE_PERL%%/Bio/SearchIO/psl.pm
%%SITE_PERL%%/Bio/SearchIO/rnamotif.pm
%%SITE_PERL%%/Bio/SearchIO/sim4.pm
%%SITE_PERL%%/Bio/SearchIO/waba.pm
%%SITE_PERL%%/Bio/SearchIO/wise.pm
%%SITE_PERL%%/Bio/Seq.pm
%%SITE_PERL%%/Bio/Seq/BaseSeqProcessor.pm
%%SITE_PERL%%/Bio/Seq/EncodedSeq.pm
%%SITE_PERL%%/Bio/Seq/LargeLocatableSeq.pm
%%SITE_PERL%%/Bio/Seq/LargePrimarySeq.pm
%%SITE_PERL%%/Bio/Seq/LargeSeq.pm
%%SITE_PERL%%/Bio/Seq/LargeSeqI.pm
%%SITE_PERL%%/Bio/Seq/Meta.pm
%%SITE_PERL%%/Bio/Seq/Meta/Array.pm
%%SITE_PERL%%/Bio/Seq/MetaI.pm
%%SITE_PERL%%/Bio/Seq/PrimaryQual.pm
%%SITE_PERL%%/Bio/Seq/PrimedSeq.pm
%%SITE_PERL%%/Bio/Seq/QualI.pm
%%SITE_PERL%%/Bio/Seq/Quality.pm
%%SITE_PERL%%/Bio/Seq/RichSeq.pm
%%SITE_PERL%%/Bio/Seq/RichSeqI.pm
%%SITE_PERL%%/Bio/Seq/SeqBuilder.pm
%%SITE_PERL%%/Bio/Seq/SeqFactory.pm
%%SITE_PERL%%/Bio/Seq/SeqFastaSpeedFactory.pm
%%SITE_PERL%%/Bio/Seq/SequenceTrace.pm
%%SITE_PERL%%/Bio/Seq/SimulatedRead.pm
%%SITE_PERL%%/Bio/Seq/TraceI.pm
%%SITE_PERL%%/Bio/SeqAnalysisParserI.pm
%%SITE_PERL%%/Bio/SeqFeature/Amplicon.pm
%%SITE_PERL%%/Bio/SeqFeature/AnnotationAdaptor.pm
%%SITE_PERL%%/Bio/SeqFeature/Collection.pm
%%SITE_PERL%%/Bio/SeqFeature/CollectionI.pm
%%SITE_PERL%%/Bio/SeqFeature/Computation.pm
%%SITE_PERL%%/Bio/SeqFeature/FeaturePair.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/Exon.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/ExonI.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/GeneStructure.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/GeneStructureI.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/Intron.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/NC_Feature.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/Poly_A_site.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/Promoter.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/Transcript.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/TranscriptI.pm
%%SITE_PERL%%/Bio/SeqFeature/Gene/UTR.pm
%%SITE_PERL%%/Bio/SeqFeature/Generic.pm
%%SITE_PERL%%/Bio/SeqFeature/Lite.pm
%%SITE_PERL%%/Bio/SeqFeature/PositionProxy.pm
%%SITE_PERL%%/Bio/SeqFeature/Primer.pm
%%SITE_PERL%%/Bio/SeqFeature/Similarity.pm
%%SITE_PERL%%/Bio/SeqFeature/SimilarityPair.pm
%%SITE_PERL%%/Bio/SeqFeature/SubSeq.pm
%%SITE_PERL%%/Bio/SeqFeature/Tools/FeatureNamer.pm
%%SITE_PERL%%/Bio/SeqFeature/Tools/IDHandler.pm
%%SITE_PERL%%/Bio/SeqFeature/Tools/TypeMapper.pm
%%SITE_PERL%%/Bio/SeqFeature/Tools/Unflattener.pm
%%SITE_PERL%%/Bio/SeqFeature/TypedSeqFeatureI.pm
%%SITE_PERL%%/Bio/SeqFeatureI.pm
%%SITE_PERL%%/Bio/SeqI.pm
%%SITE_PERL%%/Bio/SeqIO.pm
%%SITE_PERL%%/Bio/SeqIO/FTHelper.pm
%%SITE_PERL%%/Bio/SeqIO/Handler/GenericRichSeqHandler.pm
%%SITE_PERL%%/Bio/SeqIO/MultiFile.pm
%%SITE_PERL%%/Bio/SeqIO/ace.pm
%%SITE_PERL%%/Bio/SeqIO/asciitree.pm
%%SITE_PERL%%/Bio/SeqIO/bsml.pm
%%SITE_PERL%%/Bio/SeqIO/bsml_sax.pm
%%SITE_PERL%%/Bio/SeqIO/embl.pm
%%SITE_PERL%%/Bio/SeqIO/embldriver.pm
%%SITE_PERL%%/Bio/SeqIO/fasta.pm
%%SITE_PERL%%/Bio/SeqIO/fastq.pm
%%SITE_PERL%%/Bio/SeqIO/game.pm
%%SITE_PERL%%/Bio/SeqIO/game/featHandler.pm
%%SITE_PERL%%/Bio/SeqIO/game/gameHandler.pm
%%SITE_PERL%%/Bio/SeqIO/game/gameSubs.pm
%%SITE_PERL%%/Bio/SeqIO/game/gameWriter.pm
%%SITE_PERL%%/Bio/SeqIO/game/seqHandler.pm
%%SITE_PERL%%/Bio/SeqIO/gbdriver.pm
%%SITE_PERL%%/Bio/SeqIO/gbxml.pm
%%SITE_PERL%%/Bio/SeqIO/gcg.pm
%%SITE_PERL%%/Bio/SeqIO/genbank.pm
%%SITE_PERL%%/Bio/SeqIO/interpro.pm
%%SITE_PERL%%/Bio/SeqIO/kegg.pm
%%SITE_PERL%%/Bio/SeqIO/largefasta.pm
%%SITE_PERL%%/Bio/SeqIO/locuslink.pm
%%SITE_PERL%%/Bio/SeqIO/mbsout.pm
%%SITE_PERL%%/Bio/SeqIO/metafasta.pm
%%SITE_PERL%%/Bio/SeqIO/msout.pm
%%SITE_PERL%%/Bio/SeqIO/phd.pm
%%SITE_PERL%%/Bio/SeqIO/pir.pm
%%SITE_PERL%%/Bio/SeqIO/qual.pm
%%SITE_PERL%%/Bio/SeqIO/raw.pm
%%SITE_PERL%%/Bio/SeqIO/scf.pm
%%SITE_PERL%%/Bio/SeqIO/seqxml.pm
%%SITE_PERL%%/Bio/SeqIO/swiss.pm
%%SITE_PERL%%/Bio/SeqIO/swissdriver.pm
%%SITE_PERL%%/Bio/SeqIO/tab.pm
%%SITE_PERL%%/Bio/SeqIO/table.pm
%%SITE_PERL%%/Bio/SeqIO/tigr.pm
%%SITE_PERL%%/Bio/SeqIO/tigrxml.pm
%%SITE_PERL%%/Bio/SeqIO/tinyseq.pm
%%SITE_PERL%%/Bio/SeqIO/tinyseq/tinyseqHandler.pm
%%SITE_PERL%%/Bio/SeqUtils.pm
%%SITE_PERL%%/Bio/SimpleAlign.pm
%%SITE_PERL%%/Bio/SimpleAnalysisI.pm
%%SITE_PERL%%/Bio/Species.pm
%%SITE_PERL%%/Bio/Taxon.pm
%%SITE_PERL%%/Bio/Tools/Alignment/Consed.pm
%%SITE_PERL%%/Bio/Tools/Alignment/Trim.pm
%%SITE_PERL%%/Bio/Tools/AmpliconSearch.pm
%%SITE_PERL%%/Bio/Tools/Analysis/SimpleAnalysisBase.pm
%%SITE_PERL%%/Bio/Tools/AnalysisResult.pm
%%SITE_PERL%%/Bio/Tools/Blat.pm
%%SITE_PERL%%/Bio/Tools/CodonTable.pm
%%SITE_PERL%%/Bio/Tools/Coil.pm
%%SITE_PERL%%/Bio/Tools/ECnumber.pm
%%SITE_PERL%%/Bio/Tools/EMBOSS/Palindrome.pm
%%SITE_PERL%%/Bio/Tools/EPCR.pm
%%SITE_PERL%%/Bio/Tools/ESTScan.pm
%%SITE_PERL%%/Bio/Tools/Eponine.pm
%%SITE_PERL%%/Bio/Tools/Est2Genome.pm
%%SITE_PERL%%/Bio/Tools/Fgenesh.pm
%%SITE_PERL%%/Bio/Tools/FootPrinter.pm
%%SITE_PERL%%/Bio/Tools/GFF.pm
%%SITE_PERL%%/Bio/Tools/Geneid.pm
%%SITE_PERL%%/Bio/Tools/Genemark.pm
%%SITE_PERL%%/Bio/Tools/Genewise.pm
%%SITE_PERL%%/Bio/Tools/Genomewise.pm
%%SITE_PERL%%/Bio/Tools/Genscan.pm
%%SITE_PERL%%/Bio/Tools/Glimmer.pm
%%SITE_PERL%%/Bio/Tools/Grail.pm
%%SITE_PERL%%/Bio/Tools/GuessSeqFormat.pm
%%SITE_PERL%%/Bio/Tools/IUPAC.pm
%%SITE_PERL%%/Bio/Tools/Lucy.pm
%%SITE_PERL%%/Bio/Tools/MZEF.pm
%%SITE_PERL%%/Bio/Tools/Match.pm
%%SITE_PERL%%/Bio/Tools/OddCodes.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Gerp.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Molphy.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Molphy/Result.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Phylip/ProtDist.pm
%%SITE_PERL%%/Bio/Tools/Prediction/Exon.pm
%%SITE_PERL%%/Bio/Tools/Prediction/Gene.pm
%%SITE_PERL%%/Bio/Tools/Primer/Assessor/Base.pm
%%SITE_PERL%%/Bio/Tools/Primer/AssessorI.pm
%%SITE_PERL%%/Bio/Tools/Primer/Feature.pm
%%SITE_PERL%%/Bio/Tools/Primer/Pair.pm
%%SITE_PERL%%/Bio/Tools/Primer3.pm
%%SITE_PERL%%/Bio/Tools/Prints.pm
%%SITE_PERL%%/Bio/Tools/Profile.pm
%%SITE_PERL%%/Bio/Tools/Promoterwise.pm
%%SITE_PERL%%/Bio/Tools/PrositeScan.pm
%%SITE_PERL%%/Bio/Tools/Pseudowise.pm
%%SITE_PERL%%/Bio/Tools/QRNA.pm
%%SITE_PERL%%/Bio/Tools/RandomDistFunctions.pm
%%SITE_PERL%%/Bio/Tools/RepeatMasker.pm
%%SITE_PERL%%/Bio/Tools/Run/Analysis.pm
%%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory.pm
%%SITE_PERL%%/Bio/Tools/Run/GenericParameters.pm
%%SITE_PERL%%/Bio/Tools/Run/ParametersI.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PhyloBase.pm
%%SITE_PERL%%/Bio/Tools/Run/WrapperBase.pm
%%SITE_PERL%%/Bio/Tools/Run/WrapperBase/CommandExts.pm
%%SITE_PERL%%/Bio/Tools/Seg.pm
%%SITE_PERL%%/Bio/Tools/SeqPattern.pm
%%SITE_PERL%%/Bio/Tools/SeqPattern/Backtranslate.pm
%%SITE_PERL%%/Bio/Tools/SeqStats.pm
%%SITE_PERL%%/Bio/Tools/SeqWords.pm
%%SITE_PERL%%/Bio/Tools/Sigcleave.pm
%%SITE_PERL%%/Bio/Tools/Signalp.pm
%%SITE_PERL%%/Bio/Tools/Signalp/ExtendedSignalp.pm
%%SITE_PERL%%/Bio/Tools/Sim4/Exon.pm
%%SITE_PERL%%/Bio/Tools/Sim4/Results.pm
%%SITE_PERL%%/Bio/Tools/Spidey/Exon.pm
%%SITE_PERL%%/Bio/Tools/Spidey/Results.pm
%%SITE_PERL%%/Bio/Tools/TandemRepeatsFinder.pm
%%SITE_PERL%%/Bio/Tools/TargetP.pm
%%SITE_PERL%%/Bio/Tools/Tmhmm.pm
%%SITE_PERL%%/Bio/Tools/ipcress.pm
%%SITE_PERL%%/Bio/Tools/isPcr.pm
%%SITE_PERL%%/Bio/Tools/pICalculator.pm
%%SITE_PERL%%/Bio/Tools/tRNAscanSE.pm
%%SITE_PERL%%/Bio/Tree/AnnotatableNode.pm
%%SITE_PERL%%/Bio/Tree/Compatible.pm
%%SITE_PERL%%/Bio/Tree/DistanceFactory.pm
%%SITE_PERL%%/Bio/Tree/Node.pm
%%SITE_PERL%%/Bio/Tree/NodeI.pm
%%SITE_PERL%%/Bio/Tree/NodeNHX.pm
%%SITE_PERL%%/Bio/Tree/RandomFactory.pm
%%SITE_PERL%%/Bio/Tree/Statistics.pm
%%SITE_PERL%%/Bio/Tree/Tree.pm
%%SITE_PERL%%/Bio/Tree/TreeFunctionsI.pm
%%SITE_PERL%%/Bio/Tree/TreeI.pm
%%SITE_PERL%%/Bio/TreeIO.pm
%%SITE_PERL%%/Bio/TreeIO/NewickParser.pm
%%SITE_PERL%%/Bio/TreeIO/TreeEventBuilder.pm
%%SITE_PERL%%/Bio/TreeIO/cluster.pm
%%SITE_PERL%%/Bio/TreeIO/lintree.pm
%%SITE_PERL%%/Bio/TreeIO/newick.pm
%%SITE_PERL%%/Bio/TreeIO/nexus.pm
%%SITE_PERL%%/Bio/TreeIO/nhx.pm
%%SITE_PERL%%/Bio/TreeIO/pag.pm
%%SITE_PERL%%/Bio/TreeIO/phyloxml.pm
%%SITE_PERL%%/Bio/TreeIO/tabtree.pm
%%SITE_PERL%%/Bio/UpdateableSeqI.pm
%%SITE_PERL%%/Bio/WebAgent.pm
%%SITE_PERL%%/BioPerl.pm
%%PERL5_MAN1%%/bp_aacomp.1.gz
%%PERL5_MAN1%%/bp_bioflat_index.1.gz
%%PERL5_MAN1%%/bp_biogetseq.1.gz
%%PERL5_MAN1%%/bp_chaos_plot.1.gz
%%PERL5_MAN1%%/bp_dbsplit.1.gz
%%PERL5_MAN1%%/bp_extract_feature_seq.1.gz
%%PERL5_MAN1%%/bp_fastam9_to_table.1.gz
%%PERL5_MAN1%%/bp_fetch.1.gz
%%PERL5_MAN1%%/bp_filter_search.1.gz
%%PERL5_MAN1%%/bp_find-blast-matches.1.gz
%%PERL5_MAN1%%/bp_gccalc.1.gz
%%PERL5_MAN1%%/bp_genbank2gff3.1.gz
%%PERL5_MAN1%%/bp_index.1.gz
%%PERL5_MAN1%%/bp_local_taxonomydb_query.1.gz
%%PERL5_MAN1%%/bp_make_mrna_protein.1.gz
%%PERL5_MAN1%%/bp_mask_by_search.1.gz
%%PERL5_MAN1%%/bp_mrtrans.1.gz
%%PERL5_MAN1%%/bp_mutate.1.gz
%%PERL5_MAN1%%/bp_nexus2nh.1.gz
%%PERL5_MAN1%%/bp_nrdb.1.gz
%%PERL5_MAN1%%/bp_oligo_count.1.gz
%%PERL5_MAN1%%/bp_process_gadfly.1.gz
%%PERL5_MAN1%%/bp_process_sgd.1.gz
%%PERL5_MAN1%%/bp_revtrans-motif.1.gz
%%PERL5_MAN1%%/bp_search2alnblocks.1.gz
%%PERL5_MAN1%%/bp_search2gff.1.gz
%%PERL5_MAN1%%/bp_search2table.1.gz
%%PERL5_MAN1%%/bp_search2tribe.1.gz
%%PERL5_MAN1%%/bp_seq_length.1.gz
%%PERL5_MAN1%%/bp_seqconvert.1.gz
%%PERL5_MAN1%%/bp_seqcut.1.gz
%%PERL5_MAN1%%/bp_seqpart.1.gz
%%PERL5_MAN1%%/bp_seqret.1.gz
%%PERL5_MAN1%%/bp_seqretsplit.1.gz
%%PERL5_MAN1%%/bp_split_seq.1.gz
%%PERL5_MAN1%%/bp_sreformat.1.gz
%%PERL5_MAN1%%/bp_taxid4species.1.gz
%%PERL5_MAN1%%/bp_taxonomy2tree.1.gz
%%PERL5_MAN1%%/bp_translate_seq.1.gz
%%PERL5_MAN1%%/bp_tree2pag.1.gz
%%PERL5_MAN1%%/bp_unflatten_seq.1.gz
%%PERL5_MAN3%%/Bio::Align::AlignI.3.gz
%%PERL5_MAN3%%/Bio::Align::DNAStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::PairwiseStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::ProteinStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::StatisticsI.3.gz
%%PERL5_MAN3%%/Bio::Align::Utilities.3.gz
%%PERL5_MAN3%%/Bio::AlignIO.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::arp.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::bl2seq.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::clustalw.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::emboss.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::fasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::largemultifasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::maf.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::mase.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::mega.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::meme.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::metafasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::msf.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::nexus.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::pfam.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::phylip.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::po.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::proda.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::prodom.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::psi.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::selex.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::xmfa.3.gz
%%PERL5_MAN3%%/Bio::AnalysisI.3.gz
%%PERL5_MAN3%%/Bio::AnalysisParserI.3.gz
%%PERL5_MAN3%%/Bio::AnalysisResultI.3.gz
%%PERL5_MAN3%%/Bio::AnnotatableI.3.gz
%%PERL5_MAN3%%/Bio::Annotation::AnnotationFactory.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Collection.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Comment.3.gz
%%PERL5_MAN3%%/Bio::Annotation::DBLink.3.gz
%%PERL5_MAN3%%/Bio::Annotation::OntologyTerm.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Reference.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Relation.3.gz
%%PERL5_MAN3%%/Bio::Annotation::SimpleValue.3.gz
%%PERL5_MAN3%%/Bio::Annotation::StructuredValue.3.gz
%%PERL5_MAN3%%/Bio::Annotation::TagTree.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Target.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Tree.3.gz
%%PERL5_MAN3%%/Bio::Annotation::TypeManager.3.gz
%%PERL5_MAN3%%/Bio::AnnotationCollectionI.3.gz
%%PERL5_MAN3%%/Bio::AnnotationI.3.gz
%%PERL5_MAN3%%/Bio::CodonUsage::IO.3.gz
%%PERL5_MAN3%%/Bio::CodonUsage::Table.3.gz
%%PERL5_MAN3%%/Bio::DB::DBFetch.3.gz
%%PERL5_MAN3%%/Bio::DB::Failover.3.gz
%%PERL5_MAN3%%/Bio::DB::Fasta.3.gz
%%PERL5_MAN3%%/Bio::DB::FileCache.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::embl.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::fasta.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::genbank.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::swiss.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BinarySearch.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Util::Binning.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Util::Rearrange.3.gz
%%PERL5_MAN3%%/Bio::DB::GenericWebAgent.3.gz
%%PERL5_MAN3%%/Bio::DB::InMemoryCache.3.gz
%%PERL5_MAN3%%/Bio::DB::IndexedBase.3.gz
%%PERL5_MAN3%%/Bio::DB::LocationI.3.gz
%%PERL5_MAN3%%/Bio::DB::Qual.3.gz
%%PERL5_MAN3%%/Bio::DB::Query::WebQuery.3.gz
%%PERL5_MAN3%%/Bio::DB::QueryI.3.gz
%%PERL5_MAN3%%/Bio::DB::RandomAccessI.3.gz
%%PERL5_MAN3%%/Bio::DB::ReferenceI.3.gz
%%PERL5_MAN3%%/Bio::DB::Registry.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqI.3.gz
%%PERL5_MAN3%%/Bio::DB::Taxonomy.3.gz
%%PERL5_MAN3%%/Bio::DB::Taxonomy::flatfile.3.gz
%%PERL5_MAN3%%/Bio::DB::Taxonomy::greengenes.3.gz
%%PERL5_MAN3%%/Bio::DB::Taxonomy::list.3.gz
%%PERL5_MAN3%%/Bio::DB::Taxonomy::silva.3.gz
%%PERL5_MAN3%%/Bio::DB::UpdateableSeqI.3.gz
%%PERL5_MAN3%%/Bio::DB::WebDBSeqI.3.gz
%%PERL5_MAN3%%/Bio::DBLinkContainerI.3.gz
%%PERL5_MAN3%%/Bio::Das::FeatureTypeI.3.gz
%%PERL5_MAN3%%/Bio::Das::SegmentI.3.gz
%%PERL5_MAN3%%/Bio::DasI.3.gz
%%PERL5_MAN3%%/Bio::DescribableI.3.gz
%%PERL5_MAN3%%/Bio::Event::EventGeneratorI.3.gz
%%PERL5_MAN3%%/Bio::Event::EventHandlerI.3.gz
%%PERL5_MAN3%%/Bio::Factory::AnalysisI.3.gz
%%PERL5_MAN3%%/Bio::Factory::ApplicationFactoryI.3.gz
%%PERL5_MAN3%%/Bio::Factory::DriverFactory.3.gz
%%PERL5_MAN3%%/Bio::Factory::FTLocationFactory.3.gz
%%PERL5_MAN3%%/Bio::Factory::LocationFactoryI.3.gz
%%PERL5_MAN3%%/Bio::Factory::ObjectBuilderI.3.gz
%%PERL5_MAN3%%/Bio::Factory::ObjectFactory.3.gz
%%PERL5_MAN3%%/Bio::Factory::ObjectFactoryI.3.gz
%%PERL5_MAN3%%/Bio::Factory::SeqAnalysisParserFactory.3.gz
%%PERL5_MAN3%%/Bio::Factory::SeqAnalysisParserFactoryI.3.gz
%%PERL5_MAN3%%/Bio::Factory::SequenceFactoryI.3.gz
%%PERL5_MAN3%%/Bio::Factory::SequenceProcessorI.3.gz
%%PERL5_MAN3%%/Bio::Factory::SequenceStreamI.3.gz
%%PERL5_MAN3%%/Bio::Factory::TreeFactoryI.3.gz
%%PERL5_MAN3%%/Bio::FeatureHolderI.3.gz
%%PERL5_MAN3%%/Bio::HandlerBaseI.3.gz
%%PERL5_MAN3%%/Bio::IdCollectionI.3.gz
%%PERL5_MAN3%%/Bio::IdentifiableI.3.gz
%%PERL5_MAN3%%/Bio::Index::Abstract.3.gz
%%PERL5_MAN3%%/Bio::Index::AbstractSeq.3.gz
%%PERL5_MAN3%%/Bio::Index::Blast.3.gz
%%PERL5_MAN3%%/Bio::Index::BlastTable.3.gz
%%PERL5_MAN3%%/Bio::Index::EMBL.3.gz
%%PERL5_MAN3%%/Bio::Index::Fasta.3.gz
%%PERL5_MAN3%%/Bio::Index::Fastq.3.gz
%%PERL5_MAN3%%/Bio::Index::GenBank.3.gz
%%PERL5_MAN3%%/Bio::Index::Qual.3.gz
%%PERL5_MAN3%%/Bio::Index::SwissPfam.3.gz
%%PERL5_MAN3%%/Bio::Index::Swissprot.3.gz
%%PERL5_MAN3%%/Bio::LocatableSeq.3.gz
%%PERL5_MAN3%%/Bio::Location::Atomic.3.gz
%%PERL5_MAN3%%/Bio::Location::AvWithinCoordPolicy.3.gz
%%PERL5_MAN3%%/Bio::Location::CoordinatePolicyI.3.gz
%%PERL5_MAN3%%/Bio::Location::Fuzzy.3.gz
%%PERL5_MAN3%%/Bio::Location::FuzzyLocationI.3.gz
%%PERL5_MAN3%%/Bio::Location::NarrowestCoordPolicy.3.gz
%%PERL5_MAN3%%/Bio::Location::Simple.3.gz
%%PERL5_MAN3%%/Bio::Location::Split.3.gz
%%PERL5_MAN3%%/Bio::Location::SplitLocationI.3.gz
%%PERL5_MAN3%%/Bio::Location::WidestCoordPolicy.3.gz
%%PERL5_MAN3%%/Bio::LocationI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::Generic.3.gz
%%PERL5_MAN3%%/Bio::Matrix::IO.3.gz
%%PERL5_MAN3%%/Bio::Matrix::IO::mlagan.3.gz
%%PERL5_MAN3%%/Bio::Matrix::IO::phylip.3.gz
%%PERL5_MAN3%%/Bio::Matrix::IO::scoring.3.gz
%%PERL5_MAN3%%/Bio::Matrix::MatrixI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::Mlagan.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO::mast.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO::masta.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO::meme.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO::psiblast.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::IO::transfac.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::InstanceSite.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::InstanceSiteI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::ProtMatrix.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::ProtPsm.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::Psm.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::PsmHeader.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::PsmHeaderI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::PsmI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::SiteMatrix.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PSM::SiteMatrixI.3.gz
%%PERL5_MAN3%%/Bio::Matrix::PhylipDist.3.gz
%%PERL5_MAN3%%/Bio::Matrix::Scoring.3.gz
%%PERL5_MAN3%%/Bio::Ontology::DocumentRegistry.3.gz
%%PERL5_MAN3%%/Bio::Ontology::GOterm.3.gz
%%PERL5_MAN3%%/Bio::Ontology::InterProTerm.3.gz
%%PERL5_MAN3%%/Bio::Ontology::OBOEngine.3.gz
%%PERL5_MAN3%%/Bio::Ontology::OBOterm.3.gz
%%PERL5_MAN3%%/Bio::Ontology::Ontology.3.gz
%%PERL5_MAN3%%/Bio::Ontology::OntologyEngineI.3.gz
%%PERL5_MAN3%%/Bio::Ontology::OntologyI.3.gz
%%PERL5_MAN3%%/Bio::Ontology::OntologyStore.3.gz
%%PERL5_MAN3%%/Bio::Ontology::Path.3.gz
%%PERL5_MAN3%%/Bio::Ontology::PathI.3.gz
%%PERL5_MAN3%%/Bio::Ontology::Relationship.3.gz
%%PERL5_MAN3%%/Bio::Ontology::RelationshipFactory.3.gz
%%PERL5_MAN3%%/Bio::Ontology::RelationshipI.3.gz
%%PERL5_MAN3%%/Bio::Ontology::RelationshipType.3.gz
%%PERL5_MAN3%%/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3.gz
%%PERL5_MAN3%%/Bio::Ontology::SimpleOntologyEngine.3.gz
%%PERL5_MAN3%%/Bio::Ontology::Term.3.gz
%%PERL5_MAN3%%/Bio::Ontology::TermFactory.3.gz
%%PERL5_MAN3%%/Bio::Ontology::TermI.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::Handlers::BaseSAXHandler.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::Handlers::InterProHandler.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::InterProParser.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::dagflat.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::goflat.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::obo.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::simplehierarchy.3.gz
%%PERL5_MAN3%%/Bio::OntologyIO::soflat.3.gz
%%PERL5_MAN3%%/Bio::ParameterBaseI.3.gz
%%PERL5_MAN3%%/Bio::PrimarySeq.3.gz
%%PERL5_MAN3%%/Bio::PrimarySeqI.3.gz
%%PERL5_MAN3%%/Bio::PullParserI.3.gz
%%PERL5_MAN3%%/Bio::Range.3.gz
%%PERL5_MAN3%%/Bio::RangeI.3.gz
%%PERL5_MAN3%%/Bio::Root::Exception.3.gz
%%PERL5_MAN3%%/Bio::Root::HTTPget.3.gz
%%PERL5_MAN3%%/Bio::Root::IO.3.gz
%%PERL5_MAN3%%/Bio::Root::Root.3.gz
%%PERL5_MAN3%%/Bio::Root::RootI.3.gz
%%PERL5_MAN3%%/Bio::Root::Storable.3.gz
%%PERL5_MAN3%%/Bio::Root::Test.3.gz
%%PERL5_MAN3%%/Bio::Root::TestObject.3.gz
%%PERL5_MAN3%%/Bio::Root::Utilities.3.gz
%%PERL5_MAN3%%/Bio::Root::Version.3.gz
%%PERL5_MAN3%%/Bio::Search::BlastStatistics.3.gz
%%PERL5_MAN3%%/Bio::Search::BlastUtils.3.gz
%%PERL5_MAN3%%/Bio::Search::DatabaseI.3.gz
%%PERL5_MAN3%%/Bio::Search::GenericDatabase.3.gz
%%PERL5_MAN3%%/Bio::Search::GenericStatistics.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::BlastHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::BlastPullHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::FastaHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::GenericHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::HSPFactory.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::HSPI.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::ModelHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::PSLHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::PsiBlastHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::PullHSPI.3.gz
%%PERL5_MAN3%%/Bio::Search::HSP::WABAHSP.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::BlastHit.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::BlastPullHit.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::Fasta.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::GenericHit.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::HitFactory.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::HitI.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::ModelHit.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::PsiBlastHit.3.gz
%%PERL5_MAN3%%/Bio::Search::Hit::PullHitI.3.gz
%%PERL5_MAN3%%/Bio::Search::Iteration::GenericIteration.3.gz
%%PERL5_MAN3%%/Bio::Search::Iteration::IterationI.3.gz
%%PERL5_MAN3%%/Bio::Search::Processor.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::BlastPullResult.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::BlastResult.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::CrossMatchResult.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::GenericResult.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::INFERNALResult.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::PullResultI.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::ResultFactory.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::ResultI.3.gz
%%PERL5_MAN3%%/Bio::Search::Result::WABAResult.3.gz
%%PERL5_MAN3%%/Bio::Search::SearchUtils.3.gz
%%PERL5_MAN3%%/Bio::Search::StatisticsI.3.gz
%%PERL5_MAN3%%/Bio::Search::Tiling::MapTileUtils.3.gz
%%PERL5_MAN3%%/Bio::Search::Tiling::MapTiling.3.gz
%%PERL5_MAN3%%/Bio::Search::Tiling::TilingI.3.gz
%%PERL5_MAN3%%/Bio::SearchIO.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::EventHandlerI.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::FastHitEventBuilder.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::IteratedSearchResultEventBuilder.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::SearchResultEventBuilder.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::SearchWriterI.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::GbrowseGFF.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::HSPTableWriter.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::HTMLResultWriter.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::HitTableWriter.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::ResultTableWriter.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::Writer::TextResultWriter.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::axt.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::blast.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::blast_pull.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::blasttable.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::cross_match.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::erpin.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::exonerate.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::fasta.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::gmap_f9.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::infernal.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::megablast.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::psl.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::rnamotif.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::sim4.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::waba.3.gz
%%PERL5_MAN3%%/Bio::SearchIO::wise.3.gz
%%PERL5_MAN3%%/Bio::Seq.3.gz
%%PERL5_MAN3%%/Bio::Seq::BaseSeqProcessor.3.gz
%%PERL5_MAN3%%/Bio::Seq::EncodedSeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::LargeLocatableSeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::LargePrimarySeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::LargeSeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::LargeSeqI.3.gz
%%PERL5_MAN3%%/Bio::Seq::Meta.3.gz
%%PERL5_MAN3%%/Bio::Seq::Meta::Array.3.gz
%%PERL5_MAN3%%/Bio::Seq::MetaI.3.gz
%%PERL5_MAN3%%/Bio::Seq::PrimaryQual.3.gz
%%PERL5_MAN3%%/Bio::Seq::PrimedSeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::QualI.3.gz
%%PERL5_MAN3%%/Bio::Seq::Quality.3.gz
%%PERL5_MAN3%%/Bio::Seq::RichSeq.3.gz
%%PERL5_MAN3%%/Bio::Seq::RichSeqI.3.gz
%%PERL5_MAN3%%/Bio::Seq::SeqBuilder.3.gz
%%PERL5_MAN3%%/Bio::Seq::SeqFactory.3.gz
%%PERL5_MAN3%%/Bio::Seq::SeqFastaSpeedFactory.3.gz
%%PERL5_MAN3%%/Bio::Seq::SequenceTrace.3.gz
%%PERL5_MAN3%%/Bio::Seq::SimulatedRead.3.gz
%%PERL5_MAN3%%/Bio::Seq::TraceI.3.gz
%%PERL5_MAN3%%/Bio::SeqAnalysisParserI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Amplicon.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::AnnotationAdaptor.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Collection.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::CollectionI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Computation.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::FeaturePair.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::Exon.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::ExonI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::GeneStructure.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::GeneStructureI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::Intron.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::NC_Feature.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::Poly_A_site.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::Promoter.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::Transcript.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::TranscriptI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Gene::UTR.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Generic.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Lite.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::PositionProxy.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Primer.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Similarity.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::SimilarityPair.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::SubSeq.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Tools::FeatureNamer.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Tools::IDHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Tools::TypeMapper.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::Tools::Unflattener.3.gz
%%PERL5_MAN3%%/Bio::SeqFeature::TypedSeqFeatureI.3.gz
%%PERL5_MAN3%%/Bio::SeqFeatureI.3.gz
%%PERL5_MAN3%%/Bio::SeqI.3.gz
%%PERL5_MAN3%%/Bio::SeqIO.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::FTHelper.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::Handler::GenericRichSeqHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::MultiFile.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::ace.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::asciitree.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::bsml.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::bsml_sax.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::embl.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::embldriver.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::fasta.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::fastq.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game::featHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game::gameHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game::gameSubs.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game::gameWriter.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::game::seqHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::gbdriver.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::gbxml.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::gcg.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::genbank.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::interpro.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::kegg.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::largefasta.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::locuslink.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::mbsout.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::metafasta.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::msout.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::phd.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::pir.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::qual.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::raw.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::scf.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::seqxml.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::swiss.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::swissdriver.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::tab.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::table.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::tigr.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::tigrxml.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::tinyseq.3.gz
%%PERL5_MAN3%%/Bio::SeqIO::tinyseq::tinyseqHandler.3.gz
%%PERL5_MAN3%%/Bio::SeqUtils.3.gz
%%PERL5_MAN3%%/Bio::SimpleAlign.3.gz
%%PERL5_MAN3%%/Bio::SimpleAnalysisI.3.gz
%%PERL5_MAN3%%/Bio::Species.3.gz
%%PERL5_MAN3%%/Bio::Taxon.3.gz
%%PERL5_MAN3%%/Bio::Tools::Alignment::Consed.3.gz
%%PERL5_MAN3%%/Bio::Tools::Alignment::Trim.3.gz
%%PERL5_MAN3%%/Bio::Tools::AmpliconSearch.3.gz
%%PERL5_MAN3%%/Bio::Tools::Analysis::SimpleAnalysisBase.3.gz
%%PERL5_MAN3%%/Bio::Tools::AnalysisResult.3.gz
%%PERL5_MAN3%%/Bio::Tools::Blat.3.gz
%%PERL5_MAN3%%/Bio::Tools::CodonTable.3.gz
%%PERL5_MAN3%%/Bio::Tools::Coil.3.gz
%%PERL5_MAN3%%/Bio::Tools::ECnumber.3.gz
%%PERL5_MAN3%%/Bio::Tools::EMBOSS::Palindrome.3.gz
%%PERL5_MAN3%%/Bio::Tools::EPCR.3.gz
%%PERL5_MAN3%%/Bio::Tools::ESTScan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Eponine.3.gz
%%PERL5_MAN3%%/Bio::Tools::Est2Genome.3.gz
%%PERL5_MAN3%%/Bio::Tools::Fgenesh.3.gz
%%PERL5_MAN3%%/Bio::Tools::FootPrinter.3.gz
%%PERL5_MAN3%%/Bio::Tools::GFF.3.gz
%%PERL5_MAN3%%/Bio::Tools::Geneid.3.gz
%%PERL5_MAN3%%/Bio::Tools::Genemark.3.gz
%%PERL5_MAN3%%/Bio::Tools::Genewise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Genomewise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Genscan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Glimmer.3.gz
%%PERL5_MAN3%%/Bio::Tools::Grail.3.gz
%%PERL5_MAN3%%/Bio::Tools::GuessSeqFormat.3.gz
%%PERL5_MAN3%%/Bio::Tools::IUPAC.3.gz
%%PERL5_MAN3%%/Bio::Tools::Lucy.3.gz
%%PERL5_MAN3%%/Bio::Tools::MZEF.3.gz
%%PERL5_MAN3%%/Bio::Tools::Match.3.gz
%%PERL5_MAN3%%/Bio::Tools::OddCodes.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Gerp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy::Result.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
%%PERL5_MAN3%%/Bio::Tools::Prediction::Exon.3.gz
%%PERL5_MAN3%%/Bio::Tools::Prediction::Gene.3.gz
%%PERL5_MAN3%%/Bio::Tools::Primer3.3.gz
%%PERL5_MAN3%%/Bio::Tools::Primer::Assessor::Base.3.gz
%%PERL5_MAN3%%/Bio::Tools::Primer::AssessorI.3.gz
%%PERL5_MAN3%%/Bio::Tools::Primer::Feature.3.gz
%%PERL5_MAN3%%/Bio::Tools::Primer::Pair.3.gz
%%PERL5_MAN3%%/Bio::Tools::Prints.3.gz
%%PERL5_MAN3%%/Bio::Tools::Profile.3.gz
%%PERL5_MAN3%%/Bio::Tools::Promoterwise.3.gz
%%PERL5_MAN3%%/Bio::Tools::PrositeScan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Pseudowise.3.gz
%%PERL5_MAN3%%/Bio::Tools::QRNA.3.gz
%%PERL5_MAN3%%/Bio::Tools::RandomDistFunctions.3.gz
%%PERL5_MAN3%%/Bio::Tools::RepeatMasker.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Analysis.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::AnalysisFactory.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::GenericParameters.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::ParametersI.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PhyloBase.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::WrapperBase.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::WrapperBase::CommandExts.3.gz
%%PERL5_MAN3%%/Bio::Tools::Seg.3.gz
%%PERL5_MAN3%%/Bio::Tools::SeqPattern.3.gz
%%PERL5_MAN3%%/Bio::Tools::SeqPattern::Backtranslate.3.gz
%%PERL5_MAN3%%/Bio::Tools::SeqStats.3.gz
%%PERL5_MAN3%%/Bio::Tools::SeqWords.3.gz
%%PERL5_MAN3%%/Bio::Tools::Sigcleave.3.gz
%%PERL5_MAN3%%/Bio::Tools::Signalp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Signalp::ExtendedSignalp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Sim4::Exon.3.gz
%%PERL5_MAN3%%/Bio::Tools::Sim4::Results.3.gz
%%PERL5_MAN3%%/Bio::Tools::Spidey::Exon.3.gz
%%PERL5_MAN3%%/Bio::Tools::Spidey::Results.3.gz
%%PERL5_MAN3%%/Bio::Tools::TandemRepeatsFinder.3.gz
%%PERL5_MAN3%%/Bio::Tools::TargetP.3.gz
%%PERL5_MAN3%%/Bio::Tools::Tmhmm.3.gz
%%PERL5_MAN3%%/Bio::Tools::ipcress.3.gz
%%PERL5_MAN3%%/Bio::Tools::isPcr.3.gz
%%PERL5_MAN3%%/Bio::Tools::pICalculator.3.gz
%%PERL5_MAN3%%/Bio::Tools::tRNAscanSE.3.gz
%%PERL5_MAN3%%/Bio::Tree::AnnotatableNode.3.gz
%%PERL5_MAN3%%/Bio::Tree::Compatible.3.gz
%%PERL5_MAN3%%/Bio::Tree::DistanceFactory.3.gz
%%PERL5_MAN3%%/Bio::Tree::Node.3.gz
%%PERL5_MAN3%%/Bio::Tree::NodeI.3.gz
%%PERL5_MAN3%%/Bio::Tree::NodeNHX.3.gz
%%PERL5_MAN3%%/Bio::Tree::RandomFactory.3.gz
%%PERL5_MAN3%%/Bio::Tree::Statistics.3.gz
%%PERL5_MAN3%%/Bio::Tree::Tree.3.gz
%%PERL5_MAN3%%/Bio::Tree::TreeFunctionsI.3.gz
%%PERL5_MAN3%%/Bio::Tree::TreeI.3.gz
%%PERL5_MAN3%%/Bio::TreeIO.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::NewickParser.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::TreeEventBuilder.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::cluster.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::lintree.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::newick.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::nexus.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::nhx.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::pag.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::phyloxml.3.gz
%%PERL5_MAN3%%/Bio::TreeIO::tabtree.3.gz
%%PERL5_MAN3%%/Bio::UpdateableSeqI.3.gz
%%PERL5_MAN3%%/Bio::WebAgent.3.gz
%%PERL5_MAN3%%/BioPerl.3.gz
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
%%PORTDOCS%%%%DOCSDIR%%/Changes
%%PORTDOCS%%%%DOCSDIR%%/MANIFEST
%%PORTDOCS%%%%DOCSDIR%%/README.md
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Bio-DB-GFF/load_ucsc.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/FastAlign.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/align_on_codons.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/aligntutorial.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/simplealign.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/classify_hits_kingdom
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/nmrpdb_parse.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/prosite2perl.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/rebase2list.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db/est_tissue_query.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db/get_seqs.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db/rfetch.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db/use_registry.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/generate_random_seq.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/longorf.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/make_primers.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/quality/svgtrace.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/rev_and_trans.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/revcom_dir.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/root/README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/root/exceptions1.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/root/exceptions2.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/root/exceptions3.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/root/exceptions4.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/blast_example.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/custom_writer.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/hitwriter.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/hspwriter.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/htmlwriter.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/psiblast_features.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/psiblast_iterations.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/rawwriter.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/resultwriter.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/waba2gff.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/searchio/waba2gff3.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tk/gsequence.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tk/hitdisplay.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/extract_genes.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/gb_to_gff.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/gff2ps.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/parse_codeml.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/reverse-translate.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/run_genscan.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/run_primer3.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/seq_pattern.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/standaloneblast.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree/paup2phylip.pl