54 lines
1.7 KiB
Makefile
54 lines
1.7 KiB
Makefile
# $FreeBSD$
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PORTNAME= igv
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.4.16
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CATEGORIES= biology java
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MASTER_SITES= http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/:img
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DISTFILES= tools.png:img
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DIST_SUBDIR= ${PORTNAME}-${DISTVERSION}
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EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Visualization tool for genomic datasets
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LICENSE= MIT
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LICENSE_FILE= ${WRKSRC}/license.txt
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BUILD_DEPENDS= openjfx8-devel>0:java/openjfx8-devel \
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gradle4:devel/gradle4
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RUN_DEPENDS= openjfx8-devel>0:java/openjfx8-devel
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USES= gettext-runtime
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USE_GITHUB= yes
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GH_ACCOUNT= igvteam
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USE_JAVA= yes
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NO_ARCH= yes
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MAKE_ENV+= GRADLE_USER_HOME=${WRKDIR}
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SUB_FILES= ${PORTNAME}.sh
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DESKTOP_ENTRIES="IGV" "Integrative Genomics Viewer" "${PREFIX}/share/pixmaps/igv.xpm" "${PORTNAME}" \
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"Biology;Science;" true
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PLIST_FILES= bin/${PORTNAME} \
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${JAVAJARDIR}/batik-codec-1.10.jar \
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${JAVAJARDIR}/goby-io-igv-1.1.jar \
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${JAVAJARDIR}/log4j-core-2.11.0.jar \
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${JAVAJARDIR}/${PORTNAME}.jar \
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share/pixmaps/igv.png
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do-build:
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@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle4 createDist
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do-install:
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${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
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${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/${PORTNAME}.jar ${STAGEDIR}${JAVAJARDIR}
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${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/batik-codec-1.10.jar ${STAGEDIR}${JAVAJARDIR}
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${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/goby-io-igv-1.1.jar ${STAGEDIR}${JAVAJARDIR}
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${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/log4j-core-2.11.0.jar ${STAGEDIR}${JAVAJARDIR}
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${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/tools.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
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.include <bsd.port.mk>
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