opnsense-ports/biology/gatk/files/patch-build.gradle

30 lines
1.4 KiB
Groovy

--- build.gradle.orig 2018-10-23 15:15:16 UTC
+++ build.gradle
@@ -115,7 +115,7 @@ def resolveLargeResourceStubFiles(largeR
}
// check for stub files, try to pull once if there are any, then check again
- if (checkForLFSStubFiles(largeResourcesFolder)) {
+ if (false && checkForLFSStubFiles(largeResourcesFolder)) {
final gitLFSPullLargeResources = "git lfs pull --include $largeResourcesFolder"
execGitLFSCommand(gitLFSPullLargeResources)
if (checkForLFSStubFiles(largeResourcesFolder)) {
@@ -135,7 +135,7 @@ def ensureBuildPrerequisites(requiredJav
"The ClassLoader obtained from the Java ToolProvider is null. "
+ "A Java $requiredJavaVersion JDK must be installed. $buildPrerequisitesMessage")
}
- if (!file(".git").isDirectory()) {
+ if (false && !file(".git").isDirectory()) {
throw new GradleException("The GATK Github repository must be cloned using \"git clone\" to run the build. "
+ "$buildPrerequisitesMessage")
}
@@ -366,7 +366,7 @@ def createGatkSymlinks(destinationDir, a
}
final isRelease = Boolean.getBoolean("release")
-version = (isRelease ? gitVersion() : gitVersion() + "-SNAPSHOT").replaceAll(".dirty", "")
+version = (isRelease ? "1.0" : "1.0" + "-SNAPSHOT").replaceAll(".dirty", "")
logger.info("build for version:" + version)
group = 'org.broadinstitute'