19 lines
621 B
Plaintext
19 lines
621 B
Plaintext
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA
|
|
sequences against a large reference database. Typical use cases include:
|
|
|
|
(1) mapping PacBio or Oxford Nanopore genomic reads to the human genome
|
|
|
|
(2) finding overlaps between long reads with error rate up to ~15%
|
|
|
|
(3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA
|
|
readsagainst a reference genome
|
|
|
|
(4) aligning Illumina single- or paired-end reads
|
|
|
|
(5) assembly-to-assembly alignment
|
|
|
|
(6) full-genome alignment between two closely related species with divergence
|
|
below ~15%
|
|
|
|
WWW: https://github.com/lh3/minimap2
|