41 lines
1.4 KiB
Plaintext
41 lines
1.4 KiB
Plaintext
--- Makefile.orig 2019-02-28 20:49:24 UTC
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+++ Makefile
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@@ -1,11 +1,19 @@
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-CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra
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-CPPFLAGS= -DHAVE_KALLOC
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+CFLAGS?= -g -Wall -O2
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+CFLAGS+= -Wc++-compat #-Wextra
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+CPPFLAGS+= -DHAVE_KALLOC
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INCLUDES=
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OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o
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PROG= minimap2
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PROG_EXTRA= sdust minimap2-lite
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LIBS= -lm -lz -lpthread
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+PREFIX?= /usr/local
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+DESTDIR?= .
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+MAN1DIR?= ${PREFIX}/man/man1
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+MKDIR?= mkdir
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+INSTALL?= install
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+STRIP?= strip
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+
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ifeq ($(arm_neon),) # if arm_neon is not defined
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ifeq ($(sse2only),) # if sse2only is not defined
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OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
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@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h
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$(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@
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# other non-file targets
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+
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+install: all
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+ ${MKDIR} -p ${DESTDIR}${PREFIX}/bin
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+ ${MKDIR} -p ${DESTDIR}${MAN1DIR}
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+ ${INSTALL} -c minimap2 ${DESTDIR}${PREFIX}/bin
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+ ${INSTALL} -c minimap2.1 ${DESTDIR}${MAN1DIR}
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+
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+install-strip: install
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+ ${STRIP} ${DESTDIR}${PREFIX}/bin/minimap2
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clean:
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rm -fr gmon.out *.o a.out $(PROG) $(PROG_EXTRA) *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg*
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