49 lines
1.4 KiB
Makefile
49 lines
1.4 KiB
Makefile
# $FreeBSD$
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PORTNAME= plinkseq
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PORTVERSION= 0.10
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PORTREVISION= 1
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CATEGORIES= biology science
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MASTER_SITES= http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
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# Default DISTNAME is correct, so leave it alone.
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DISTFILES= ${PORTNAME}-src-${PORTVERSION}.tgz
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Toolset for working with human genetic variation data
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BROKEN= unfetchable
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DEPRECATED= Broken for more than 6 months
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EXPIRATION_DATE= 2020-05-05
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LICENSE= GPLv2
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BROKEN_aarch64= Does not build: Host architecture was not detected as supported by protobuf
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BROKEN_mips64= Does not build: Host architecture was not detected as supported by protobuf
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BROKEN_powerpc64= Does not build: atomicops.h: error: stray '\#' in program
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USES= libtool gmake
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post-patch:
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${REINPLACE_CMD} \
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-e 's|PF_INET|AF_INET|g' \
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${WRKSRC}/sources/mongoose/sources/lib/mongoose.c
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${REINPLACE_CMD} \
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-e 's|g++|${CXX}|g' \
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-e 's|gcc|${CC}|g' \
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-e 's|CXXFLAGS = -O3|CXXFLAGS = ${CXXFLAGS}|g' \
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-e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = ${CFLAGS}|g' \
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${WRKSRC}/config_defs.Makefile
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${REINPLACE_CMD} \
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-e 's| -ldl||g' \
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-e 's| $$(STATIC_FLAG)||g' \
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${WRKSRC}/Makefile
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do-install:
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.for f in behead browser gcol mm mongoose pdas pseq smp tab2vcf
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${INSTALL_PROGRAM} ${WRKSRC}/build/execs/${f} ${STAGEDIR}${PREFIX}/bin
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.endfor
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${INSTALL_DATA} ${WRKSRC}/sources/plinkseq/build/lib/libplinkseq.a \
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${STAGEDIR}${PREFIX}/lib
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.include <bsd.port.mk>
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