49 lines
1.1 KiB
Makefile
49 lines
1.1 KiB
Makefile
# $FreeBSD$
|
|
|
|
PORTNAME= bowtie
|
|
PORTVERSION= 1.1.2
|
|
PORTREVISION= 6
|
|
DISTVERSIONPREFIX= v
|
|
CATEGORIES= biology
|
|
|
|
MAINTAINER= jwb@FreeBSD.org
|
|
COMMENT= Ultrafast, memory-efficient short read aligner
|
|
|
|
LICENSE= ART10
|
|
|
|
# May also work on other 64-bit platforms, but untested
|
|
ONLY_FOR_ARCHS= amd64
|
|
# FIXME: bowtie-align intermittently dumps core when compiled with clang
|
|
# GCC 4.2 does not provide good performance
|
|
USE_GCC= yes
|
|
USES= gmake perl5 python:run shebangfix
|
|
USE_PERL5= run
|
|
SHEBANG_FILES= scripts/*.pl bowtie bowtie-build \
|
|
bowtie-inspect
|
|
|
|
USE_GITHUB= yes
|
|
GH_ACCOUNT= BenLangmead
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
post-install:
|
|
${MKDIR} ${STAGEDIR}${DATADIR}/scripts
|
|
${INSTALL_SCRIPT} \
|
|
${WRKSRC}/bowtie \
|
|
${WRKSRC}/bowtie-build \
|
|
${WRKSRC}/bowtie-inspect \
|
|
${STAGEDIR}${PREFIX}/bin
|
|
${INSTALL_SCRIPT} \
|
|
${WRKSRC}/scripts/*.sh \
|
|
${WRKSRC}/scripts/*.pl \
|
|
${STAGEDIR}${DATADIR}/scripts
|
|
cd ${WRKSRC} && ${COPYTREE_SHARE} \
|
|
'genomes indexes reads' \
|
|
${STAGEDIR}${DATADIR}
|
|
cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \
|
|
\* \
|
|
${STAGEDIR}${DOCSDIR}
|
|
${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*-[sl]
|
|
|
|
.include <bsd.port.mk>
|