535 lines
26 KiB
Plaintext
535 lines
26 KiB
Plaintext
include/sbml/AlgebraicRule.h
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include/sbml/AssignmentRule.h
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include/sbml/Compartment.h
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include/sbml/CompartmentType.h
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include/sbml/Constraint.h
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include/sbml/Delay.h
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include/sbml/Event.h
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include/sbml/EventAssignment.h
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include/sbml/ExpectedAttributes.h
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include/sbml/FunctionDefinition.h
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include/sbml/InitialAssignment.h
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include/sbml/KineticLaw.h
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include/sbml/ListOf.h
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include/sbml/LocalParameter.h
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include/sbml/Model.h
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include/sbml/ModifierSpeciesReference.h
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include/sbml/Parameter.h
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include/sbml/Priority.h
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include/sbml/RateRule.h
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include/sbml/Reaction.h
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include/sbml/Rule.h
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include/sbml/SBMLConstructorException.h
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include/sbml/SBMLDocument.h
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include/sbml/SBMLError.h
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include/sbml/SBMLErrorLog.h
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include/sbml/SBMLErrorTable.h
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include/sbml/SBMLNamespaces.h
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include/sbml/SBMLReader.h
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include/sbml/SBMLTransforms.h
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include/sbml/SBMLTypeCodes.h
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include/sbml/SBMLTypes.h
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include/sbml/SBMLVisitor.h
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include/sbml/SBMLWriter.h
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include/sbml/SBO.h
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include/sbml/SBase.h
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include/sbml/SimpleSpeciesReference.h
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include/sbml/Species.h
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include/sbml/SpeciesReference.h
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include/sbml/SpeciesType.h
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include/sbml/StoichiometryMath.h
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include/sbml/SyntaxChecker.h
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include/sbml/Trigger.h
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include/sbml/Unit.h
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include/sbml/UnitDefinition.h
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include/sbml/UnitKind.h
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include/sbml/annotation/CVTerm.h
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include/sbml/annotation/Date.h
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include/sbml/annotation/ModelCreator.h
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include/sbml/annotation/ModelHistory.h
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include/sbml/annotation/RDFAnnotation.h
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include/sbml/annotation/RDFAnnotationParser.h
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include/sbml/common/common-documentation.h
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include/sbml/common/common-sbmlerror-codes.h
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include/sbml/common/common.h
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include/sbml/common/extern.h
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include/sbml/common/libsbml-config-common.h
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include/sbml/common/libsbml-config-packages.h
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include/sbml/common/libsbml-config.h
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include/sbml/common/libsbml-namespace.h
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include/sbml/common/libsbml-package.h
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include/sbml/common/libsbml-version.h
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include/sbml/common/operationReturnValues.h
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include/sbml/common/sbmlfwd.h
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include/sbml/compress/CompressCommon.h
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include/sbml/compress/InputDecompressor.h
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include/sbml/compress/OutputCompressor.h
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include/sbml/compress/bzfstream.h
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include/sbml/compress/crypt.h
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include/sbml/compress/ioapi.h
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include/sbml/compress/ioapi_mem.h
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include/sbml/compress/iowin32.h
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include/sbml/compress/unzip.h
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include/sbml/compress/zfstream.h
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include/sbml/compress/zip.h
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include/sbml/compress/zipfstream.h
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include/sbml/conversion/ConversionOption.h
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include/sbml/conversion/ConversionProperties.h
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include/sbml/conversion/SBMLConverter.h
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include/sbml/conversion/SBMLConverterRegister.h
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include/sbml/conversion/SBMLConverterRegistry.h
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include/sbml/conversion/SBMLConverterTypes.h
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include/sbml/conversion/SBMLFunctionDefinitionConverter.h
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include/sbml/conversion/SBMLIdConverter.h
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include/sbml/conversion/SBMLInferUnitsConverter.h
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include/sbml/conversion/SBMLInitialAssignmentConverter.h
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include/sbml/conversion/SBMLLevel1Version1Converter.h
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include/sbml/conversion/SBMLLevelVersionConverter.h
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include/sbml/conversion/SBMLLocalParameterConverter.h
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include/sbml/conversion/SBMLRateOfConverter.h
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include/sbml/conversion/SBMLReactionConverter.h
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include/sbml/conversion/SBMLRuleConverter.h
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include/sbml/conversion/SBMLStripPackageConverter.h
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include/sbml/conversion/SBMLUnitsConverter.h
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include/sbml/extension/ASTBasePlugin.h
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include/sbml/extension/ISBMLExtensionNamespaces.h
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include/sbml/extension/RegisterExtensions.h
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include/sbml/extension/SBMLDocumentPlugin.h
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include/sbml/extension/SBMLDocumentPluginNotRequired.h
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include/sbml/extension/SBMLExtension.h
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include/sbml/extension/SBMLExtensionException.h
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include/sbml/extension/SBMLExtensionNamespaces.h
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include/sbml/extension/SBMLExtensionRegister.h
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include/sbml/extension/SBMLExtensionRegistry.h
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include/sbml/extension/SBaseExtensionPoint.h
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include/sbml/extension/SBasePlugin.h
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include/sbml/extension/SBasePluginCreator.h
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include/sbml/extension/SBasePluginCreatorBase.h
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include/sbml/math/ASTNode.h
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include/sbml/math/ASTNodeType.h
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include/sbml/math/DefinitionURLRegistry.h
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include/sbml/math/FormulaFormatter.h
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include/sbml/math/FormulaParser.h
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include/sbml/math/FormulaTokenizer.h
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include/sbml/math/L3FormulaFormatter.h
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include/sbml/math/L3Parser.h
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include/sbml/math/L3ParserSettings.h
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include/sbml/math/MathML.h
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include/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h
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include/sbml/packages/l3v2extendedmath/common/l3v2extendedmathfwd.h
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include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h
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include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h
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include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h
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include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h
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include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLError.h
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include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLErrorTable.h
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include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h
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include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h
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include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.h
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include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.h
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include/sbml/units/FormulaUnitsData.h
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include/sbml/units/UnitFormulaFormatter.h
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include/sbml/units/UnitKindList.h
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include/sbml/util/CallbackRegistry.h
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include/sbml/util/ElementFilter.h
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include/sbml/util/IdFilter.h
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include/sbml/util/IdList.h
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include/sbml/util/IdentifierTransformer.h
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include/sbml/util/List.h
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include/sbml/util/MathFilter.h
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include/sbml/util/MetaIdFilter.h
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include/sbml/util/PrefixTransformer.h
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include/sbml/util/Stack.h
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include/sbml/util/StringBuffer.h
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include/sbml/util/memory.h
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include/sbml/util/util.h
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include/sbml/validator/ConsistencyValidator.h
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include/sbml/validator/ConstraintMacros.h
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include/sbml/validator/IdentifierConsistencyValidator.h
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include/sbml/validator/InternalConsistencyValidator.h
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include/sbml/validator/L1CompatibilityValidator.h
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include/sbml/validator/L2v1CompatibilityValidator.h
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include/sbml/validator/L2v2CompatibilityValidator.h
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include/sbml/validator/L2v3CompatibilityValidator.h
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include/sbml/validator/L2v4CompatibilityValidator.h
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include/sbml/validator/L3v1CompatibilityValidator.h
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include/sbml/validator/L3v2CompatibilityValidator.h
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include/sbml/validator/MathMLConsistencyValidator.h
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include/sbml/validator/ModelingPracticeValidator.h
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include/sbml/validator/OverdeterminedValidator.h
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include/sbml/validator/SBMLExternalValidator.h
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include/sbml/validator/SBMLInternalValidator.h
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include/sbml/validator/SBMLValidator.h
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include/sbml/validator/SBOConsistencyValidator.h
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include/sbml/validator/StrictUnitConsistencyValidator.h
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include/sbml/validator/UnitConsistencyValidator.h
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include/sbml/validator/VConstraint.h
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include/sbml/validator/Validator.h
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include/sbml/xml/ExpatAttributes.h
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include/sbml/xml/ExpatHandler.h
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include/sbml/xml/ExpatParser.h
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include/sbml/xml/LibXMLAttributes.h
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include/sbml/xml/LibXMLHandler.h
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include/sbml/xml/LibXMLNamespaces.h
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include/sbml/xml/LibXMLParser.h
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include/sbml/xml/LibXMLTranscode.h
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include/sbml/xml/XMLAttributes.h
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include/sbml/xml/XMLBuffer.h
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include/sbml/xml/XMLConstructorException.h
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include/sbml/xml/XMLError.h
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include/sbml/xml/XMLErrorLog.h
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include/sbml/xml/XMLExtern.h
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include/sbml/xml/XMLFileBuffer.h
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include/sbml/xml/XMLHandler.h
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include/sbml/xml/XMLInputStream.h
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include/sbml/xml/XMLLogOverride.h
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include/sbml/xml/XMLMemoryBuffer.h
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include/sbml/xml/XMLNamespaces.h
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include/sbml/xml/XMLNode.h
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include/sbml/xml/XMLOutputStream.h
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include/sbml/xml/XMLParser.h
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include/sbml/xml/XMLToken.h
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include/sbml/xml/XMLTokenizer.h
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include/sbml/xml/XMLTriple.h
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include/sbml/xml/XercesAttributes.h
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include/sbml/xml/XercesHandler.h
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include/sbml/xml/XercesNamespaces.h
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include/sbml/xml/XercesParser.h
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include/sbml/xml/XercesTranscode.h
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lib/libsbml-static.a
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lib/libsbml.so
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lib/libsbml.so.5
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lib/libsbml.so.%%PORTVERSION%%
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libdata/pkgconfig/libsbml.pc
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lib/cmake/sbml-config-release.cmake
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lib/cmake/sbml-config-version.cmake
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lib/cmake/sbml-config.cmake
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lib/cmake/sbml-static-config-release.cmake
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lib/cmake/sbml-static-config-version.cmake
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lib/cmake/sbml-static-config.cmake
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%%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth
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%%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
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%%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py
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%%RUBY%%%%RUBY_SITEARCHLIBDIR%%/libSBML.so
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/FormulaGraphvizFormatter.h
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addCVTerms.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addModelHistory.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addingEvidenceCodes_1.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addingEvidenceCodes_2.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/appendAnnotation.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/convertSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/createExampleSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/drawMath.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/echoSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/evaluateMath.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printAnnotation.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printMath.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printNotes.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printRegisteredPackages.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSupported.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printUnits.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/promoteParameters.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/readSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/stripPackage.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateL3Math.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateMath.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/unsetAnnotation.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/unsetNotes.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.h
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/validateSBML.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCVTerms.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCustomValidator.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addModelHistory.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_1.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_2.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/appendAnnotation.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/callExternalValidator.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertReactions.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertToL1V1.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/createExampleSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/echoSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/getAllElementsWithNotes.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/inferUnits.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/inlineFunctionDefintions.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/addLayout.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/convertLayout.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example1-L3.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example1.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example2-L3.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example2.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example3-L3.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example3.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printAnnotation.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printMath.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printNotes.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printRegisteredPackages.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSupported.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printUnits.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/promoteParameters.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/renameSId.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/rngvalidator.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/setIdFromNames.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/setNamesFromIds.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/stripPackage.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateL3Math.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateMath.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetAnnotation.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetNotes.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.c
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.h
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/validateSBML.cpp
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/GetAllElementsWithNotes.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/SetIdFromNames.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addCVTerms.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addCustomValidator.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addModelHistory.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addingEvidenceCodes_1.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addingEvidenceCodes_2.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/appendAnnotation.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/callExternalValidator.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/convertSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/createExampleSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/echoSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/evaluateCustomMath.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/inlineInitialAssignments.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/layout/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/layout/example1-L3.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printAnnotation.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printMath.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printNotes.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printRegisteredPackages.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printUnits.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printsupported.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/promoteParameters.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/readSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/replaceOneFD.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/stripPackage.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/translateMath.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/unsetAnnotation.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/unsetNotes.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/validateSBML.cs
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/CMakeLists.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/README.txt
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCVTerms.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCustomValidator.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addModelHistory.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addingEvidenceCodes_1.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addingEvidenceCodes_2.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/appendAnnotation.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/callExternalValidator.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/convertSBML.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/createExampleSBML.java
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/echoSBML.java
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