54 lines
1.3 KiB
Makefile
54 lines
1.3 KiB
Makefile
# Created by: Mauricio Herrera Cuadra <mauricio@arareko.net>
|
|
# $FreeBSD$
|
|
|
|
PORTNAME= BioPerl-Run
|
|
PORTVERSION= 1.007002
|
|
CATEGORIES= biology perl5
|
|
MASTER_SITES= CPAN
|
|
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
|
|
PKGNAMEPREFIX= p5-
|
|
|
|
MAINTAINER= perl@FreeBSD.org
|
|
COMMENT= Wrapper modules for common bioinformatics tools
|
|
|
|
LICENSE= ART10 GPLv1+
|
|
LICENSE_COMB= dual
|
|
LICENSE_FILE_ART10= ${WRKSRC}/LICENSE
|
|
|
|
BUILD_DEPENDS= ${RUN_DEPENDS}
|
|
RUN_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
|
|
p5-Bio-FeatureIO>=0:biology/p5-Bio-FeatureIO \
|
|
p5-BioPerl>=1.007000:biology/p5-BioPerl \
|
|
p5-Config-Any>=0:devel/p5-Config-Any \
|
|
p5-File-Sort>=0:misc/p5-File-Sort \
|
|
p5-IO-String>=0:devel/p5-IO-String \
|
|
p5-IPC-Run>=0:devel/p5-IPC-Run \
|
|
p5-XML-Twig>=0:textproc/p5-XML-Twig
|
|
|
|
CONFLICTS= p5-bioperl-run-1.[13579]*
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
NO_ARCH= yes
|
|
USES= perl5 shebangfix
|
|
USE_PERL5= modbuild
|
|
SHEBANG_FILES= scripts/*
|
|
|
|
PORTDOCS= *
|
|
|
|
post-build:
|
|
(cd ${WRKSRC} && ${PERL} ./Build manifest)
|
|
|
|
post-install:
|
|
.for i in bioperl_application_installer multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
|
|
${INSTALL_SCRIPT} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
|
|
.endfor
|
|
|
|
post-install-DOCS-on:
|
|
@${MKDIR} ${STAGEDIR}${DOCSDIR}
|
|
.for doc in AUTHORS Changes INSTALL.PROGRAMS README.md
|
|
${INSTALL_DATA} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
|
|
.endfor
|
|
|
|
.include <bsd.port.mk>
|