opensourcemirror
/
opnsense-ports
mirror of https://github.com/opnsense/ports.git
1
0
Fork 0
Code Issues Releases Wiki Activity
opnsense-ports/biology/p5-BioPerl-Run/pkg-plist

205 lines
9.5 KiB
Plaintext
Raw Blame History

bin/bp_multi_hmmsearch
bin/bp_panalysis
bin/bp_papplmaker
bin/bp_run_neighbor
bin/bp_run_protdist
%%SITE_PERL%%/Bio/DB/ESoap.pm
%%SITE_PERL%%/Bio/DB/ESoap/WSDL.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/FetchAdaptor.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/LinkAdaptor.pm
%%SITE_PERL%%/Bio/DB/SoapEUtilities/Result.pm
%%SITE_PERL%%/Bio/Factory/EMBOSS.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Amap.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Blat.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/DBA.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Exonerate.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Gmap.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Kalign.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Lagan.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/MAFFT.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/MSAProbs.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Muscle.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Pal2Nal.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Probalign.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Probcons.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Proda.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Sim4.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/StandAloneFasta.pm
%%SITE_PERL%%/Bio/Tools/Run/Analysis/soap.pm
%%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory/soap.pm
%%SITE_PERL%%/Bio/Tools/Run/BEDTools.pm
%%SITE_PERL%%/Bio/Tools/Run/BEDTools/Config.pm
%%SITE_PERL%%/Bio/Tools/Run/BlastPlus.pm
%%SITE_PERL%%/Bio/Tools/Run/BlastPlus/Config.pm
%%SITE_PERL%%/Bio/Tools/Run/Coil.pm
%%SITE_PERL%%/Bio/Tools/Run/EMBOSSApplication.pm
%%SITE_PERL%%/Bio/Tools/Run/EMBOSSacd.pm
%%SITE_PERL%%/Bio/Tools/Run/ERPIN.pm
%%SITE_PERL%%/Bio/Tools/Run/Ensembl.pm
%%SITE_PERL%%/Bio/Tools/Run/Eponine.pm
%%SITE_PERL%%/Bio/Tools/Run/FootPrinter.pm
%%SITE_PERL%%/Bio/Tools/Run/Genemark.pm
%%SITE_PERL%%/Bio/Tools/Run/Genewise.pm
%%SITE_PERL%%/Bio/Tools/Run/Genscan.pm
%%SITE_PERL%%/Bio/Tools/Run/Glimmer.pm
%%SITE_PERL%%/Bio/Tools/Run/Hmmer.pm
%%SITE_PERL%%/Bio/Tools/Run/Infernal.pm
%%SITE_PERL%%/Bio/Tools/Run/MCS.pm
%%SITE_PERL%%/Bio/Tools/Run/Match.pm
%%SITE_PERL%%/Bio/Tools/Run/Mdust.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/FastTree.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Gerp.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/Base.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/REL.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/LVB.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Njtree/Best.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Base.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Consense.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phyml.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/QuickTree.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Raxml.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/SLR.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Semphy.pm
%%SITE_PERL%%/Bio/Tools/Run/Primate.pm
%%SITE_PERL%%/Bio/Tools/Run/Primer3.pm
%%SITE_PERL%%/Bio/Tools/Run/Prints.pm
%%SITE_PERL%%/Bio/Tools/Run/Profile.pm
%%SITE_PERL%%/Bio/Tools/Run/Promoterwise.pm
%%SITE_PERL%%/Bio/Tools/Run/Pseudowise.pm
%%SITE_PERL%%/Bio/Tools/Run/RNAMotif.pm
%%SITE_PERL%%/Bio/Tools/Run/RepeatMasker.pm
%%SITE_PERL%%/Bio/Tools/Run/Samtools.pm
%%SITE_PERL%%/Bio/Tools/Run/Samtools/Config.pm
%%SITE_PERL%%/Bio/Tools/Run/Seg.pm
%%SITE_PERL%%/Bio/Tools/Run/Signalp.pm
%%SITE_PERL%%/Bio/Tools/Run/Simprot.pm
%%SITE_PERL%%/Bio/Tools/Run/StandAloneBlast.pm
%%SITE_PERL%%/Bio/Tools/Run/StandAloneBlastPlus.pm
%%SITE_PERL%%/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
%%SITE_PERL%%/Bio/Tools/Run/StandAloneNCBIBlast.pm
%%SITE_PERL%%/Bio/Tools/Run/StandAloneWUBlast.pm
%%SITE_PERL%%/Bio/Tools/Run/Tmhmm.pm
%%SITE_PERL%%/Bio/Tools/Run/TribeMCL.pm
%%SITE_PERL%%/Bio/Tools/Run/Vista.pm
%%SITE_PERL%%/Bio/Tools/Run/tRNAscanSE.pm
%%PERL5_MAN3%%/Bio::DB::ESoap.3.gz
%%PERL5_MAN3%%/Bio::DB::ESoap::WSDL.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::DocSumAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor::species.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::GQueryAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::LinkAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::Result.3.gz
%%PERL5_MAN3%%/Bio::Factory::EMBOSS.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Amap.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Blat.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::DBA.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Exonerate.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Gmap.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Kalign.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Lagan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::MAFFT.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::MSAProbs.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Muscle.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Pal2Nal.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Probalign.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Probcons.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Proda.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Sim4.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::StandAloneFasta.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Analysis::soap.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::AnalysisFactory::soap.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::BEDTools.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::BEDTools::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::BlastPlus.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Coil.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::EMBOSSApplication.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::EMBOSSacd.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::ERPIN.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Ensembl.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Eponine.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::FootPrinter.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genemark.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genewise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genscan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Glimmer.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Hmmer.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Infernal.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::MCS.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Match.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Mdust.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::FastTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Gerp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::Base.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::FEL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::REL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::SLAC.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::LVB.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Molphy::ProtML.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Njtree::Best.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phast::PhastCons.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phast::PhyloFit.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Base.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Consense.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::DrawGram.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::DrawTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Neighbor.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::ProtDist.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::ProtPars.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phyml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::QuickTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Raxml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::SLR.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Semphy.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Primate.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Primer3.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Prints.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Profile.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Promoterwise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Pseudowise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::RNAMotif.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::RepeatMasker.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Samtools.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Samtools::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Seg.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Signalp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Simprot.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneBlast.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneBlastPlus.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneNCBIBlast.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneWUBlast.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Tmhmm.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::TribeMCL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Vista.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::tRNAscanSE.3.gz
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
%%PORTDOCS%%%%DOCSDIR%%/Changes
%%PORTDOCS%%%%DOCSDIR%%/INSTALL.PROGRAMS
%%PORTDOCS%%%%DOCSDIR%%/README.md
Reference in New Issue View Git Blame Copy Permalink