43 lines
1.4 KiB
Makefile
43 lines
1.4 KiB
Makefile
# $FreeBSD$
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PORTNAME= orange3-single-cell
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DISTVERSION= 0.8.2
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PORTREVISION= 2
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CATEGORIES= biology python
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Orange add-on for gene expression of single cell data
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LICENSE= AGPLv3+
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RUN_DEPENDS= orange3>0:misc/orange3 \
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${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}astropy>0:astro/py-astropy@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}fastdtw>0:math/py-fastdtw@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}joblib>=0.11:devel/py-joblib@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}loompy>=2.0.10:biology/py-loompy@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}pandas>=0.23:math/py-pandas@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \
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${PYNUMPY}
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# Supports 3.4+ but loompy 3.6+ only.
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USES= python:3.6+
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USE_GITHUB= yes
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GH_ACCOUNT= biolab
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USE_PYTHON= distutils autoplist
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OPTIONS_DEFINE= DOCS
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DOCS_BUILD_DEPENDS= gmake:devel/gmake \
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${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR}
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pre-build-DOCS-on:
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@cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${GMAKE} html htmlhelp SPHINXBUILD=${LOCALBASE}/bin/sphinx-build-${PYTHON_VER}
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pre-build-DOCS-off:
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@${REINPLACE_CMD} "s|^ include_documentation| #include_documentation|" ${WRKSRC}/setup.py
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.include <bsd.port.mk>
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