51 lines
1.4 KiB
Makefile
51 lines
1.4 KiB
Makefile
PORTNAME= paml
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DISTVERSIONPREFIX= v
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DISTVERSION= 4.10.6
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CATEGORIES= biology
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MAINTAINER= jrm@FreeBSD.org
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COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
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WWW= http://abacus.gene.ucl.ac.uk/software/paml.html
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LICENSE= GPLv3
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USES= dos2unix gmake
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DOS2UNIX_GLOB= *.aa *.c *.ctl *.dat *.HKYG5 *.nexus *.nuc *.phy *.result *.tre \
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*.trees *.txt *.xml paupblock paupend
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USE_GITHUB= yes
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GH_ACCOUNT= abacus-gene
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BINARIES= baseml basemlg chi2 codeml evolver evolverNSbranches \
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evolverNSbranchsites evolverNSsites infinitesites mcmctree pamp \
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yn00
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OPTIONS_DEFINE= DOCS EXAMPLES
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post-extract:
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@${FIND} ${WRKSRC}/Technical -name "*.exe" -delete
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do-build:
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@cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${MAKE_CMD}
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.for f in NSbranches NSsites NSbranchsites
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@cd ${WRKSRC}/src && \
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${CC} ${CFLAGS} -DCodon${f} -o evolver${f} evolver.c tools.c -lm
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.endfor
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do-install:
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.for f in ${BINARIES}
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${INSTALL_PROGRAM} ${WRKSRC}/src/${f} ${STAGEDIR}${PREFIX}/bin
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.endfor
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do-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${WRKSRC}/doc/* ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${WRKSRC}/README.md ${STAGEDIR}${DOCSDIR}
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do-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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(cd ${WRKSRC} && ${COPYTREE_SHARE} "dat Technical" \
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${STAGEDIR}${EXAMPLESDIR})
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(cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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.include <bsd.port.mk>
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