11 lines
639 B
Plaintext
11 lines
639 B
Plaintext
Rainbow provides an ultra-fast and memory-efficient solution to clustering and
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assembling short genetic sequence reads produced by Restriction site Associated
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DNA Sequencing (RAD-seq). It does this by, first, clustering reads using a
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spaced seed method, then it divides potential groups into haplotypes in a
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top-down manner. Next, along a guide tree, it iteratively merges sibling
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leaves in a bottom-up manner if they are similar enough. Finally, Rainbow uses
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a greedy algorithm to locally assemble merged reads into contigs. Both optimal
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and suboptimal assembly results are output.
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WWW: https://sourceforge.net/projects/bio-rainbow/
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