9 lines
436 B
Plaintext
9 lines
436 B
Plaintext
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports
|
|
bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria
|
|
(12S,16S) and eukaryotes (5S,5.8S,28S,18S).
|
|
|
|
It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new
|
|
nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
|
|
Multithreading is supported and one can expect roughly linear speed-ups with
|
|
more CPUs.
|