opnsense-ports/biology
Franco Fichtner d35ca004f6 */*: sync with upstream
Taken from: FreeBSD
2024-03-26 10:55:10 +01:00
..
R-cran-Biobase */*: sync with upstream 2023-12-19 09:56:16 +01:00
R-cran-BiocGenerics */*: sync with upstream 2023-12-19 09:56:16 +01:00
R-cran-BiocManager */*: sync with upstream 2023-12-19 09:56:16 +01:00
abyss */*: sync with upstream 2024-03-04 13:24:38 +01:00
ad2vcf */*: sync with upstream 2024-03-04 13:24:38 +01:00
artemis ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
atac-seq */*: sync with upstream 2024-01-11 08:55:29 +01:00
augustus */*: sync with upstream 2024-01-31 16:40:26 +01:00
avida */*: sync with upstream 2024-01-02 12:53:53 +01:00
babel */*: sync with upstream 2023-11-01 08:06:14 +01:00
bamtools ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
bamutil ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
barrnap */*: sync with upstream 2022-11-25 13:10:02 +01:00
bbmap ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
bcf-score */*: sync with upstream 2023-07-17 07:53:42 +02:00
bcftools */*: sync with upstream 2024-03-04 13:24:38 +01:00
bedtools */*: sync with upstream 2023-11-09 12:15:31 +01:00
bfc ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
bifrost */*: sync with upstream 2024-03-20 08:52:32 +01:00
bio-mocha */*: sync with upstream 2023-01-09 17:44:31 +01:00
bioawk ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
biococoa */*: sync with upstream 2023-04-27 09:41:23 +02:00
biolibc */*: sync with upstream 2024-01-25 15:00:41 +01:00
biolibc-tools */*: sync with upstream 2024-03-04 13:24:38 +01:00
bioparser */*: sync with upstream 2023-09-01 09:22:26 +02:00
biosig */*: sync with upstream 2024-03-04 13:24:38 +01:00
biosoup */*: sync with upstream 2023-09-01 09:22:26 +02:00
biostar-tools */*: sync with upstream 2024-02-20 05:09:22 +01:00
bolt-lmm */*: sync with upstream 2024-02-14 10:54:02 +01:00
bowtie */*: sync with upstream 2023-11-07 14:07:58 +01:00
bowtie2 */*: sync with upstream 2024-01-22 09:39:49 +01:00
btllib */*: sync with upstream 2024-01-16 11:33:30 +01:00
bwa */*: sync with upstream 2024-01-11 08:55:29 +01:00
canu */*: sync with upstream 2023-07-21 09:38:38 +02:00
cd-hit */*: sync with upstream 2023-08-15 11:17:50 +02:00
cdbfasta */*: sync with upstream 2023-07-17 07:53:42 +02:00
checkm */*: sync with upstream 2023-06-28 09:14:20 +02:00
chip-seq */*: sync with upstream 2023-06-15 10:55:42 +02:00
clustal-omega ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
clustalw */*: sync with upstream 2023-07-17 07:53:42 +02:00
cufflinks */*: sync with upstream 2024-02-14 10:54:02 +01:00
cytoscape */*: sync with upstream 2022-12-12 10:05:00 +01:00
ddocent */*: sync with upstream 2023-04-24 07:58:56 +02:00
diamond */*: sync with upstream 2024-02-06 12:59:33 +01:00
dsr-pdb */*: sync with upstream 2024-02-14 10:54:02 +01:00
edlib ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
emboss */*: sync with upstream 2024-01-02 12:53:53 +01:00
erminej ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
exonerate */*: sync with upstream 2024-02-23 09:55:30 +01:00
fasda */*: sync with upstream 2024-03-04 13:24:38 +01:00
fasta */*: sync with upstream 2024-01-11 08:55:29 +01:00
fasta3 */*: sync with upstream 2024-01-11 08:55:29 +01:00
fastahack ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
fastdnaml ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
fastool ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
fastp */*: sync with upstream 2023-06-02 10:20:54 +02:00
fastq-trim */*: sync with upstream 2024-03-04 13:24:38 +01:00
fastqc */*: sync with upstream 2023-03-06 09:58:19 +01:00
fasttree ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
fastx-toolkit */*: sync with upstream 2023-03-08 09:48:47 +01:00
figtree ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
flash ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
fluctuate ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
freebayes */*: sync with upstream 2023-01-20 22:10:15 +01:00
garlic ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
gatk */*: sync with upstream 2024-02-20 05:09:22 +01:00
gcta */*: sync with upstream 2023-12-13 09:08:38 +01:00
gemma */*: sync with upstream 2023-12-13 09:08:38 +01:00
generand */*: sync with upstream 2024-03-04 13:24:38 +01:00
gff2ps */*: sync with upstream 2023-05-22 08:38:37 +02:00
gffread ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
gmap ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
gperiodic */*: sync with upstream 2023-03-03 12:35:16 +01:00
graphlan ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
groopm */*: sync with upstream 2023-06-28 09:14:20 +02:00
haplohseq */*: sync with upstream 2024-02-14 10:54:02 +01:00
hhsuite */*: sync with upstream 2024-02-20 05:09:22 +01:00
hisat2 ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
hmmer */*: sync with upstream 2024-02-23 09:55:30 +01:00
htslib */*: sync with upstream 2024-01-31 16:40:26 +01:00
hyphy */*: sync with upstream 2023-12-27 08:21:45 +01:00
igv */*: sync with upstream 2023-04-27 09:41:23 +02:00
infernal */*: sync with upstream 2024-02-23 09:55:30 +01:00
iolib */*: sync with upstream 2024-02-23 09:55:30 +01:00
iqtree */*: sync with upstream 2023-09-05 08:02:39 +02:00
jalview */*: sync with upstream 2023-06-20 08:30:40 +02:00
jellyfish */*: sync with upstream 2024-03-04 13:24:38 +01:00
kallisto */*: sync with upstream 2023-11-07 14:07:58 +01:00
kmcp */*: sync with upstream 2024-03-26 10:55:10 +01:00
lamarc */*: sync with upstream 2023-08-18 11:35:51 +02:00
libbigwig */*: sync with upstream 2024-01-02 12:53:53 +01:00
libcombine */*: sync with upstream 2023-05-30 10:59:29 +02:00
libgff ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
libgtextutils ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
libneurosim */*: sync with upstream 2023-06-28 09:14:20 +02:00
libnuml ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
libsbml */*: sync with upstream 2023-10-09 11:59:08 +02:00
libsedml */*: sync with upstream 2023-05-30 10:59:29 +02:00
linux-foldingathome ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
locarna */*: sync with upstream 2024-03-04 13:24:38 +01:00
mafft */*: sync with upstream 2024-02-23 09:55:30 +01:00
mapm3 ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
mashmap */*: sync with upstream 2024-01-16 11:33:30 +01:00
megahit */*: sync with upstream 2022-11-25 13:10:02 +01:00
metaeuk */*: sync with upstream 2024-02-06 12:59:33 +01:00
migrate */*: sync with upstream 2024-01-11 08:55:29 +01:00
minimap2 */*: sync with upstream 2024-03-26 10:55:10 +01:00
mmseqs2 ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
molden */*: sync with upstream 2023-04-24 07:58:56 +02:00
mothur */*: sync with upstream 2023-10-09 11:59:08 +02:00
mrbayes ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
mummer */*: sync with upstream 2023-11-07 14:07:58 +01:00
muscle ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
ncbi-blast+ */*: sync with upstream 2024-03-11 10:55:04 +01:00
ncbi-cxx-toolkit */*: sync with upstream 2024-03-11 10:55:04 +01:00
ncbi-entrez-direct */*: sync with upstream 2024-03-26 10:55:10 +01:00
ncbi-toolkit */*: sync with upstream 2024-01-16 11:33:30 +01:00
ncbi-vdb */*: sync with upstream 2023-04-24 07:58:56 +02:00
ngs-sdk */*: sync with upstream 2024-02-06 12:59:33 +01:00
p5-AcePerl ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-ASN1-EntrezGene ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Cluster ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Coordinate ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-DB-EMBL ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-DB-NCBIHelper */*: sync with upstream 2023-12-27 08:21:45 +01:00
p5-Bio-Das ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Das-Lite ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-FeatureIO ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-GFF3 ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Glite ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Graphics ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-MAGETAB ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-NEXUS ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Phylo ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-SCF ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-Bio-Variation ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-BioPerl */*: sync with upstream 2023-10-12 16:02:20 +02:00
p5-BioPerl-Run ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
p5-TrimGalore */*: sync with upstream 2023-08-07 10:16:45 +02:00
p5-transdecoder */*: sync with upstream 2023-08-07 10:16:45 +02:00
paml */*: sync with upstream 2023-07-17 07:53:42 +02:00
pbbam */*: sync with upstream 2023-01-09 17:44:31 +01:00
pbseqan ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
peak-classifier */*: sync with upstream 2024-03-04 13:24:38 +01:00
pear-merger */*: sync with upstream 2024-01-16 11:33:30 +01:00
phrap ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
phred ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
phyml */*: sync with upstream 2023-05-08 14:55:47 +02:00
picard-tools */*: sync with upstream 2023-04-11 09:42:51 +02:00
plink */*: sync with upstream 2024-01-02 12:53:53 +01:00
pooler */*: sync with upstream 2024-02-23 09:55:30 +01:00
primer3 */*: sync with upstream 2023-08-07 10:16:45 +02:00
prodigal */*: sync with upstream 2023-07-24 08:36:38 +02:00
prodigy-lig */*: sync with upstream 2024-03-22 08:28:46 +01:00
protomol */*: sync with upstream 2023-11-02 12:44:20 +01:00
psi88 */*: sync with upstream 2023-04-24 07:58:56 +02:00
py-Genesis-PyAPI */*: sync with upstream 2023-08-01 10:51:20 +02:00
py-PySCeS */*: sync with upstream 2023-12-19 09:56:16 +01:00
py-bcbio-gff */*: sync with upstream 2023-03-17 11:07:30 +01:00
py-biom-format */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-biopython */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-biosig */*: sync with upstream 2023-11-07 14:07:58 +01:00
py-bx-python */*: sync with upstream 2024-02-13 11:37:15 +01:00
py-crossmap */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-cutadapt */*: sync with upstream 2024-03-20 08:52:32 +01:00
py-deeptools */*: sync with upstream 2023-06-20 08:30:40 +02:00
py-deeptoolsintervals */*: sync with upstream 2023-01-12 13:30:53 +01:00
py-dna-features-viewer */*: sync with upstream 2023-11-07 14:07:58 +01:00
py-dnaio */*: sync with upstream 2024-02-29 11:59:25 +01:00
py-ete3 */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-gffutils */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-goatools */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-gtfparse */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-hits */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-htseq */*: sync with upstream 2024-01-22 09:39:49 +01:00
py-libnuml */*: sync with upstream 2023-04-20 09:14:31 +02:00
py-libsedml */*: sync with upstream 2023-04-20 09:14:31 +02:00
py-loompy */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-macs2 */*: sync with upstream 2023-08-07 10:16:45 +02:00
py-macs3 */*: sync with upstream 2024-02-29 11:59:25 +01:00
py-mrcfile */*: sync with upstream 2024-01-22 09:39:49 +01:00
py-multiqc */*: sync with upstream 2023-08-07 10:16:45 +02:00
py-newick */*: sync with upstream 2024-02-06 12:59:33 +01:00
py-ont-fast5-api */*: sync with upstream 2023-04-24 07:58:56 +02:00
py-orange3-bioinformatics */*: sync with upstream 2024-02-29 11:59:25 +01:00
py-orange3-single-cell */*: sync with upstream 2023-08-01 10:51:20 +02:00
py-pandas-charm */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-py2bit */*: sync with upstream 2023-01-12 13:30:53 +01:00
py-pybigwig */*: sync with upstream 2023-12-19 09:56:16 +01:00
py-pyfaidx */*: sync with upstream 2023-06-28 09:14:20 +02:00
py-pyrodigal */*: sync with upstream 2024-03-11 10:55:04 +01:00
py-pysam */*: sync with upstream 2023-12-11 11:32:56 +01:00
py-python-libsbml */*: sync with upstream 2023-12-11 11:32:56 +01:00
py-pywgsim */*: sync with upstream 2023-01-12 13:30:53 +01:00
py-resdk */*: sync with upstream 2024-02-29 11:59:25 +01:00
py-scikit-bio */*: sync with upstream 2023-08-03 09:33:28 +02:00
py-valerius */*: sync with upstream 2022-10-05 08:15:46 +02:00
py-xenaPython */*: sync with upstream 2023-06-28 09:14:20 +02:00
pyfasta */*: sync with upstream 2023-06-28 09:14:20 +02:00
python-nexus */*: sync with upstream 2024-02-06 12:59:33 +01:00
rainbow ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
rampler */*: sync with upstream 2023-04-24 07:58:56 +02:00
readseq ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
rna-seq */*: sync with upstream 2023-08-01 10:51:20 +02:00
ruby-bio */*: sync with upstream 2023-01-16 20:20:04 +01:00
rubygem-bio */*: sync with upstream 2023-10-09 11:59:08 +02:00
rubygem-bio-executables */*: sync with upstream 2023-01-16 20:20:04 +01:00
rubygem-bio-old-biofetch-emulator */*: sync with upstream 2023-01-16 20:20:04 +01:00
rubygem-bio-shell */*: sync with upstream 2023-01-16 20:20:04 +01:00
salmon */*: sync with upstream 2023-11-29 09:23:15 +01:00
sam2pairwise ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
samtools */*: sync with upstream 2024-03-04 13:24:38 +01:00
scrm */*: sync with upstream 2024-03-04 13:24:38 +01:00
seaview */*: sync with upstream 2024-01-16 11:33:30 +01:00
seqan ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
seqan-apps */*: sync with upstream 2023-08-07 10:16:45 +02:00
seqan1 ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
seqan3 */*: sync with upstream 2023-09-11 14:35:19 +02:00
seqkit */*: sync with upstream 2024-03-26 10:55:10 +01:00
seqtk */*: sync with upstream 2023-05-30 10:59:29 +02:00
seqwish */*: sync with upstream 2023-11-07 14:07:58 +01:00
sigviewer */*: sync with upstream 2023-04-24 07:58:56 +02:00
slclust ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
smithwaterman ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
snpeff */*: sync with upstream 2023-11-07 14:07:58 +01:00
spoa */*: sync with upstream 2023-09-01 09:22:26 +02:00
sra-tools */*: sync with upstream 2023-08-11 09:38:15 +02:00
stacks ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
star */*: sync with upstream 2023-08-23 11:37:13 +02:00
stringtie ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
subread ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
tRNAscan-SE */*: sync with upstream 2022-10-12 14:27:21 +02:00
tabixpp */*: sync with upstream 2023-01-20 22:10:15 +01:00
taxonkit */*: sync with upstream 2024-03-26 10:55:10 +01:00
treekin */*: sync with upstream 2024-03-04 13:24:38 +01:00
treepuzzle ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
trimadap */*: sync with upstream 2023-08-07 10:16:45 +02:00
trimmomatic ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
ucsc-userapps */*: sync with upstream 2024-01-02 12:53:53 +01:00
ugene */*: sync with upstream 2024-01-11 08:55:29 +01:00
unikmer */*: sync with upstream 2024-03-26 10:55:10 +01:00
vcf-split */*: sync with upstream 2024-03-04 13:24:38 +01:00
vcf2hap */*: sync with upstream 2024-03-04 13:24:38 +01:00
vcflib */*: sync with upstream 2024-03-04 13:24:38 +01:00
vcftools */*: sync with upstream 2024-03-04 13:24:38 +01:00
velvet ports: bulk WWW change from FreeBSD 2022-09-07 22:33:21 +02:00
viennarna */*: sync with upstream 2024-03-04 13:24:38 +01:00
vsearch */*: sync with upstream 2024-03-04 13:24:38 +01:00
vt */*: sync with upstream 2023-01-09 17:44:31 +01:00
wfa2-lib */*: sync with upstream 2023-10-09 11:59:08 +02:00
wise */*: sync with upstream 2023-07-26 08:58:56 +02:00
Makefile */*: sync with upstream 2024-02-06 12:59:33 +01:00