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Code Issues Releases Wiki Activity

*/*: sync with upstream 

Taken from: FreeBSD
This commit is contained in:
Franco Fichtner 2024-03-04 13:24:38 +01:00
parent 963592fa04
commit 7e47c3a3b9
1196 changed files with 25299 additions and 12812 deletions
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4
accessibility/sct/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= sct
DISTVERSION= 1.0.0
PORTREVISION= 1
CATEGORIES= accessibility
MAINTAINER= 0mp@FreeBSD.org
@ -13,9 +14,10 @@ USES= xorg
USE_GITHUB= yes
GH_ACCOUNT= 0mp
USE_XORG= x11 xrandr
MAKE_ARGS= MANPREFIX=${PREFIX}/share
INSTALL_TARGET= install-strip
PLIST_FILES= bin/sct \
man/man1/sct.1.gz
share/man/man1/sct.1.gz
.include <bsd.port.mk>

10
arabic/libreoffice/distinfo
View File

@ -1,5 +1,5 @@
TIMESTAMP = 1706730698
SHA256 (libreoffice/i18n/LibreOffice_24.2.0_Linux_x86-64_deb_langpack_ar.tar.gz) = a3678e5c6dfd0a05ccc524ef707f0080fbe071f8f55f364d4a810bc51a976d65
SIZE (libreoffice/i18n/LibreOffice_24.2.0_Linux_x86-64_deb_langpack_ar.tar.gz) = 1764385
SHA256 (libreoffice/i18n/LibreOffice_24.2.0_Linux_x86-64_deb_helppack_ar.tar.gz) = 653968c3172969d7cec281bc2fcc7ba609c99063140d41e41a7067f31f95fd46
SIZE (libreoffice/i18n/LibreOffice_24.2.0_Linux_x86-64_deb_helppack_ar.tar.gz) = 2375946
TIMESTAMP = 1709425855
SHA256 (libreoffice/i18n/LibreOffice_24.2.1_Linux_x86-64_deb_langpack_ar.tar.gz) = db803447488f32b49e1d8fd09fa5cdfb0056ffbaf4aa40474c2805ffcd0dc955
SIZE (libreoffice/i18n/LibreOffice_24.2.1_Linux_x86-64_deb_langpack_ar.tar.gz) = 1764607
SHA256 (libreoffice/i18n/LibreOffice_24.2.1_Linux_x86-64_deb_helppack_ar.tar.gz) = d2a676865992d114eb4699bc7445d622e48655d6950d240140f7e08f88c6b0e0
SIZE (libreoffice/i18n/LibreOffice_24.2.1_Linux_x86-64_deb_helppack_ar.tar.gz) = 2376013

4
archivers/deutex/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= deutex
PORTVERSION= 5.2.2
DISTVERSIONPREFIX= v
PORTREVISION= 1
CATEGORIES= archivers games
MAINTAINER= kai@FreeBSD.org
@ -19,9 +20,10 @@ USE_GITHUB= yes
GH_ACCOUNT= Doom-Utils
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
PLIST_FILES= bin/deutex \
man/man6/${PORTNAME}.6.gz
share/man/man6/${PORTNAME}.6.gz
PORTDOCS= *
OPTIONS_DEFINE= DOCS PNG

21
archivers/dpkg/pkg-plist
View File

@ -286,7 +286,7 @@ libexec/pkgconfig/libdpkg.pc
%%NLS%%share/man/fr/man5/dselect.cfg.5.gz
%%NLS%%share/man/fr/man7/deb-version.7.gz
%%NLS%%share/man/fr/man8/start-stop-daemon.8.gz
%%NLS%%@dir man/fr/man8
%%NLS%%@dir share/man/fr/man8
%%NLS%%share/man/it/man1/dpkg-maintscript-helper.1.gz
%%NLS%%share/man/it/man1/dpkg-split.1.gz
%%NLS%%share/man/it/man1/update-alternatives.1.gz
@ -294,13 +294,14 @@ libexec/pkgconfig/libdpkg.pc
%%NLS%%share/man/it/man5/deb-old.5.gz
%%NLS%%share/man/it/man5/deb-override.5.gz
%%NLS%%share/man/it/man5/deb-split.5.gz
%%NLS%%@dir man/it/man8
%%NLS%%@dir share/man/it/man8
%%NLS%%share/man/ja/man1/dpkg-split.1.gz
%%NLS%%share/man/ja/man1/update-alternatives.1.gz
%%NLS%%share/man/ja/man5/deb-extra-override.5.gz
%%NLS%%share/man/ja/man5/deb-old.5.gz
%%NLS%%share/man/ja/man5/deb-override.5.gz
%%NLS%%share/man/ja/man5/deb-split.5.gz
%%NLS%%@dir share/man/ja/man8
share/man/man1/dpkg-architecture.1.gz
share/man/man1/dpkg-buildflags.1.gz
share/man/man1/dpkg-buildpackage.1.gz
@ -476,7 +477,7 @@ share/man/man8/start-stop-daemon.8.gz
%%NLS%%share/man/sv/man5/deb-old.5.gz
%%NLS%%share/man/sv/man5/deb-override.5.gz
%%NLS%%share/man/sv/man5/deb-split.5.gz
%%NLS%%@dir man/sv/man8
%%NLS%%@dir share/man/sv/man8
sbin/start-stop-daemon
%%DATADIR%%/abitable
%%DATADIR%%/architecture.mk
@ -577,13 +578,13 @@ share/polkit-1/actions/org.dpkg.pkexec.update-alternatives.policy
%%DPKGDIR%%/status.sample
@dir %%ETCDIR%%/dpkg.cfg.d
%%NLS%%@dir %%ETCDIR%%/dselect.cfg.d
%%NLS%%@dir man/es/man7
%%NLS%%@dir man/es/man8
%%NLS%%@dir man/fr/man7
%%NLS%%@dir man/it/man7
%%NLS%%@dir man/pl/man7
%%NLS%%@dir man/pl/man8
%%NLS%%@dir man/sv/man7
%%NLS%%@dir share/man/es/man7
%%NLS%%@dir share/man/es/man8
%%NLS%%@dir share/man/fr/man7
%%NLS%%@dir share/man/it/man7
%%NLS%%@dir share/man/pl/man7
%%NLS%%@dir share/man/pl/man8
%%NLS%%@dir share/man/sv/man7
@dir %%DPKGDIR%%/alternatives
@dir %%DPKGDIR%%/info
@dir %%DPKGDIR%%/methods/disk

6
archivers/kf6-karchive/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1704953265
SHA256 (KDE/frameworks/5.248.0/karchive-5.248.0.tar.xz) = 1d30889f31354bf4a4e6b33664d439a023b97b59858648689567007feef9f92c
SIZE (KDE/frameworks/5.248.0/karchive-5.248.0.tar.xz) = 1027812
TIMESTAMP = 1708670351
SHA256 (KDE/frameworks/6.0.0/karchive-6.0.0.tar.xz) = 75a591d9648026eb86826974e6f3882e7f620592ecef8fabeb19206e63b04e50
SIZE (KDE/frameworks/6.0.0/karchive-6.0.0.tar.xz) = 1029452

2
astro/calcmysky/Makefile
View File

@ -20,4 +20,6 @@ USE_QT= buildtools:build qmake:build core gui opengl widgets
CMAKE_ARGS= -DQT_VERSION:STRING=5
CXXFLAGS+= -DGLM_ENABLE_EXPERIMENTAL # GLM_GTX_transform is an experimental extension
.include <bsd.port.mk>

5
audio/amsynth/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= amsynth
DISTVERSION= 1.11.0
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= audio
MASTER_SITES= https://github.com/amsynth/amsynth/releases/download/release-${DISTVERSION}/
@ -11,6 +11,8 @@ WWW= https://amsynth.github.io/
LICENSE= GPLv2+
LICENSE_FILE= ${WRKSRC}/COPYING
BROKEN= error: no matching function for call to 'lo_server_add_method'
BUILD_DEPENDS= dssi>0:audio/dssi
LIB_DEPENDS= libasound.so:audio/alsa-lib \
libfontconfig.so:x11-fonts/fontconfig \
@ -26,6 +28,7 @@ USES= compiler:c++11-lang gettext-tools gmake gnome libtool localbase \
USE_GNOME= atk cairo gdkpixbuf2 glib20 gtk20 intltool pango
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
OPTIONS_DEFINE= MANPAGES NLS
OPTIONS_DEFAULT= MANPAGES

6
audio/amsynth/pkg-plist
View File

@ -30,9 +30,9 @@ lib/lv2/amsynth.lv2/amsynth_lv2.so
lib/lv2/amsynth.lv2/amsynth_lv2_gtk.so
lib/lv2/amsynth.lv2/manifest.ttl
lib/vst/amsynth_vst.so
%%MANPAGES%%man/de/man1/amsynth.1.gz
%%MANPAGES%%man/fr/man1/amsynth.1.gz
%%MANPAGES%%man/man1/amsynth.1.gz
%%MANPAGES%%share/man/de/man1/amsynth.1.gz
%%MANPAGES%%share/man/fr/man1/amsynth.1.gz
%%MANPAGES%%share/man/man1/amsynth.1.gz
%%DATADIR%%/banks/BriansBank01.amSynth.bank
%%DATADIR%%/banks/BriansBank02.amSynth.bank
%%DATADIR%%/banks/BriansBank03.amSynth.bank

3
audio/aqualung/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= aqualung
PORTVERSION= 1.0
PORTREVISION= 25
PORTREVISION= 26
CATEGORIES= audio
MASTER_SITES= SF
@ -34,6 +34,7 @@ LIB_DEPENDS= libFLAC.so:audio/flac \
USES= compiler:c++11-lang cpe gettext gnome localbase lua:52 pkgconfig
USE_GNOME= gtk20 libxml2 libxslt
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
LDFLAGS+= -L${LOCALBASE}/ffmpeg4/lib
CONFIGURE_ENV+= PKG_CONFIG_PATH="${LOCALBASE}/ffmpeg4/libdata/pkgconfig"

2
audio/aqualung/pkg-plist
View File

@ -1,5 +1,5 @@
bin/aqualung
man/man1/aqualung.1.gz
share/man/man1/aqualung.1.gz
%%DATADIR%%/appearance.png
%%DATADIR%%/cdda.png
%%DATADIR%%/cddb.png

12
audio/ardour/Makefile
View File

@ -1,11 +1,11 @@
PORTNAME= ardour
DISTVERSION= 8.1.0
DISTVERSION= 8.4.0
CATEGORIES= audio
# Official source download is tailored to browsers, downloads from github are
# deliberately made empty. Put the badly named distfile into a subdirectory.
MASTER_SITES= https://community.ardour.org/download/release/
DISTNAME= Ardour-${DISTVERSION}
DISTFILES= 550
DISTFILES= 562
DIST_SUBDIR= ${DISTNAME}
MAINTAINER= dev@submerge.ch
@ -53,12 +53,15 @@ USE_LDCONFIG= yes
USE_XORG= x11
CONFIGURE_ARGS= --optimize --ptformat --freedesktop --no-phone-home \
--with-backends=jack,dummy --internal-shared-libs \
--with-backends=jack,dummy --internal-shared-libs --no-ytk \
${CONFIGURE_ARGS_${ARCH}}
CONFIGURE_ARGS_amd64= --arch='-msse -mfpmath=sse -DARCH_X86' --dist-target=x86_64
# only support for i686 or better
CONFIGURE_ARGS_i386= --arch='-msse -mfpmath=sse -march=i686 -DARCH_X86' --dist-target=i686
CONFIGURE_ENV+= PYTHONDONTWRITEBYTECODE=1
MAKE_ENV+= PYTHONDONTWRITEBYTECODE=1
LDFLAGS_powerpc= -Wl,-z,notext
ARDOUR_MAJOR= ardour8
@ -75,8 +78,7 @@ OPTIONS_SUB= yes
VST3_DESC= Build with VST3 plugin support
VST3_BUILD_DEPENDS= vst3sdk>0:audio/vst3sdk
# Inverted logic, the --vst3 argument _disables_ VST3 support.
VST3_CONFIGURE_OFF= --vst3
VST3_CONFIGURE_OFF= --no-vst3
post-patch:
@${REINPLACE_CMD} -e 's/obj\.use = '\''libsmf libpbd'\''/obj\.use = '\''libsmf_internal libpbd'\''/g' ${WRKSRC}/libs/evoral/wscript

6
audio/ardour/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1697821942
SHA256 (Ardour-8.1.0/550) = 5a2656b326b2ee38f14df9378d044982f9ca1607e7e0bec647686eb6edc9dc17
SIZE (Ardour-8.1.0/550) = 13835817
TIMESTAMP = 1708609514
SHA256 (Ardour-8.4.0/562) = 7c64fd95808d94440639698e0f8ece30da8b5efde2777fff55c8bc21404e28cf
SIZE (Ardour-8.4.0/562) = 17574218

12
audio/ardour/files/patch-libs_aaf_AAFIAudioFiles.c Normal file
View File

@ -0,0 +1,12 @@
--- libs/aaf/AAFIAudioFiles.c.orig 2023-12-14 16:14:03 UTC
+++ libs/aaf/AAFIAudioFiles.c
@@ -39,6 +39,9 @@
#include <arpa/inet.h>
#include <mntent.h>
#include <unistd.h> /* access() */
+#elif defined(__FreeBSD__)
+#include <limits.h>
+#include <unistd.h>
#elif defined(__APPLE__)
#include <sys/syslimits.h>
#include <unistd.h> /* access() */

11
audio/ardour/files/patch-libs_aaf_aaf_LibCFB.h Normal file
View File

@ -0,0 +1,11 @@
--- libs/aaf/aaf/LibCFB.h.orig 2023-12-14 15:52:18 UTC
+++ libs/aaf/aaf/LibCFB.h
@@ -28,6 +28,8 @@
#if defined(__linux__)
#include <linux/limits.h>
+#elif defined(__FreeBSD__)
+#include <limits.h>
#elif defined(__APPLE__)
#include <sys/syslimits.h>
#elif defined(_MSC_VER) // MSVC

15
audio/ardour/pkg-plist
View File

@ -46,6 +46,9 @@ lib/%%ARDOUR_MAJOR%%/backends/libdummy_audiobackend.so
lib/%%ARDOUR_MAJOR%%/backends/libjack_audiobackend.so
lib/%%ARDOUR_MAJOR%%/engines/libclearlooks.so
lib/%%ARDOUR_MAJOR%%/hardour-%%VERSION%%
lib/%%ARDOUR_MAJOR%%/libaaf.so
lib/%%ARDOUR_MAJOR%%/libaaf.so.0
lib/%%ARDOUR_MAJOR%%/libaaf.so.0.0.0
lib/%%ARDOUR_MAJOR%%/libardour.so
lib/%%ARDOUR_MAJOR%%/libardour.so.3
lib/%%ARDOUR_MAJOR%%/libardour.so.3.0.0
@ -95,9 +98,12 @@ lib/%%ARDOUR_MAJOR%%/surfaces/libardour_faderport2.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_faderport8.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_generic_midi.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_launch_control_xl.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_launchpad_mini.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_launchpad_pro.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_launchpad_x.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_mcp.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_osc.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_ssl_uf8.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_us2400.so
lib/%%ARDOUR_MAJOR%%/surfaces/libardour_websockets.so
lib/%%ARDOUR_MAJOR%%/utils/ardour-util.sh
@ -180,7 +186,9 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/icons/halfnote.png
%%DATADIR%%/icons/i_beam_cursor.png
%%DATADIR%%/icons/launch_control_xl.png
%%DATADIR%%/icons/launchpad-mini.png
%%DATADIR%%/icons/launchpad-pro.png
%%DATADIR%%/icons/launchpad-x.png
%%DATADIR%%/icons/mezzforte.png
%%DATADIR%%/icons/mezzoforte.png
%%DATADIR%%/icons/mezzopiano.png
@ -307,6 +315,7 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/midi_maps/Alesis_QX25.map
%%DATADIR%%/midi_maps/Alesis_VI25.map
%%DATADIR%%/midi_maps/Arturia_KeyLab49.map
%%DATADIR%%/midi_maps/Arturia_MiniLab_3.map
%%DATADIR%%/midi_maps/Arturia_MiniLab_mkII.map
%%DATADIR%%/midi_maps/DDX3216.map
%%DATADIR%%/midi_maps/Devine_Versakey.map
@ -336,6 +345,7 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/midi_maps/akai-mpd-32.map
%%DATADIR%%/midi_maps/bcf2000.map
%%DATADIR%%/midi_maps/bcf2000_mackie.map
%%DATADIR%%/midi_maps/donnerdmk25.map
%%DATADIR%%/midi_maps/m-audio-oxygen61v3.map
%%DATADIR%%/midi_maps/m-audio_oxygen25.map
%%DATADIR%%/midi_maps/m-audio_oxygen25_3rdGen.map
@ -594,6 +604,7 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/patchfiles/Lexicon_DR_Music_FX_Expansion.midnam
%%DATADIR%%/patchfiles/Lexicon_Dual_FX_Expansion.midnam
%%DATADIR%%/patchfiles/Lexicon_Dual_Vrb_Expansion.midnam
%%DATADIR%%/patchfiles/Lexicon_MPX100.midnam
%%DATADIR%%/patchfiles/Lexicon_MPX500.midnam
%%DATADIR%%/patchfiles/Lexicon_MPX_1.midnam
%%DATADIR%%/patchfiles/Lexicon_MPX_500.midnam
@ -792,6 +803,7 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/patchfiles/Yamaha_S30_80.midnam
%%DATADIR%%/patchfiles/Yamaha_S90.midnam
%%DATADIR%%/patchfiles/Yamaha_SY77.midnam
%%DATADIR%%/patchfiles/Yamaha_SY85.midnam
%%DATADIR%%/patchfiles/Yamaha_SY99.midnam
%%DATADIR%%/patchfiles/Yamaha_So3.midnam
%%DATADIR%%/patchfiles/Yamaha_So8.midnam
@ -854,6 +866,7 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/scripts/record_now.lua
%%DATADIR%%/scripts/remove_unknown_procs.lua
%%DATADIR%%/scripts/reset_mixer.lua
%%DATADIR%%/scripts/reverse_midi.lua
%%DATADIR%%/scripts/rubberband_swing.lua
%%DATADIR%%/scripts/s_chanmap.lua
%%DATADIR%%/scripts/s_cut_copy_section.lua
@ -896,11 +909,13 @@ share/applications/%%ARDOUR_MAJOR%%.desktop
%%DATADIR%%/scripts/surround_to_stereo.lua
%%DATADIR%%/scripts/tomsloop.lua
%%DATADIR%%/scripts/track_organizer.lua
%%DATADIR%%/scripts/trigger_mixer_scene.lua
%%DATADIR%%/scripts/tx_raw_midi_from_file.lua
%%DATADIR%%/scripts/vamp_audio_to_midi.lua
%%DATADIR%%/scripts/voice_activate.lua
%%DATADIR%%/scripts/x-fade.lua
%%DATADIR%%/templates/.stub
%%DATADIR%%/themes/adwaita_dark-ardour.colors
%%DATADIR%%/themes/blueberry_milk-ardour.colors
%%DATADIR%%/themes/caineville-ardour.colors
%%DATADIR%%/themes/clear_gray-ardour.colors

2
audio/elisa/Makefile
View File

@ -11,7 +11,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING
USES= cmake compiler:c++14-lang desktop-file-utils gettext kde:5 \
pkgconfig qt:5 tar:xz xorg
USE_KDE= auth baloo5 bookmarks codecs completion config configwidgets \
USE_KDE= auth baloo bookmarks codecs completion config configwidgets \
coreaddons crash dbusaddons filemetadata i18n iconthemes \
itemviews jobwidgets kcmutils kdeclarative kio kirigami2 \
package service solid widgetsaddons windowsystem xmlgui \

11
audio/flite/files/patch-main_Makefile
View File

@ -1,6 +1,15 @@
--- main/Makefile.orig 2017-10-21 14:01:07 UTC
+++ main/Makefile
@@ -133,15 +133,15 @@ $(BINDIR)/flite_${VOICE}: flite_main.o flite_lang_list
@@ -49,7 +49,7 @@ ALL = shared_libs \
$(BINDIR)/flite$(EXEEXT) \
$(BINDIR)/t2p$(EXEEXT) $(BINDIR)/compile_regexes$(EXEEXT) \
$(BINDIR)/flitevox_info$(EXEEXT) \
- flite_voice_list.c each $(EXTRABINS)
+ each $(EXTRABINS)
VOICES=$(VOXES)
VOICELIBS=$(VOICES:%=flite_%)
@@ -133,15 +133,15 @@ install:
install:
# The basic binaries

3
audio/libopenmpt/Makefile
View File

@ -1,7 +1,6 @@
PORTNAME= libopenmpt
DISTVERSION= 0.7.3
DISTVERSION= 0.7.4
DISTVERSIONSUFFIX= +release.autotools
PORTREVISION= 1
CATEGORIES= audio
MASTER_SITES= https://lib.openmpt.org/files/libopenmpt/src/ \
LOCAL/ehaupt

6
audio/libopenmpt/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1694409543
SHA256 (libopenmpt-0.7.3+release.autotools.tar.gz) = 2cf8369b7916b09264f3f14b9fb6cef35a6e9bee0328dec4f49d98211ccfd722
SIZE (libopenmpt-0.7.3+release.autotools.tar.gz) = 1648862
TIMESTAMP = 1709536034
SHA256 (libopenmpt-0.7.4+release.autotools.tar.gz) = 1600f9335eae3904089a6286f525812961c54ce36a05dfe6eeaa576dd9328f3f
SIZE (libopenmpt-0.7.4+release.autotools.tar.gz) = 1651458

48
audio/lingot/Makefile
View File

@ -1,44 +1,50 @@
PORTNAME= lingot
PORTVERSION= 1.0.1
PORTREVISION= 6
DISTVERSION= 1.1.1
CATEGORIES= audio
MASTER_SITES= SAVANNAH
MAINTAINER= ports@FreeBSD.org
MAINTAINER= eduardo@FreeBSD.org
COMMENT= Musical instrument tuner
WWW= https://www.nongnu.org/lingot/
LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/COPYING
USES= gmake gnome pkgconfig
USE_GNOME= gtk30 gdkpixbuf2 cairo intltool
GNU_CONFIGURE= yes
LIB_DEPENDS= libjson-c.so:devel/json-c
USES= gettext-tools gmake gnome libtool pkgconfig
USE_GNOME= cairo gtk30 intltool
GNU_CONFIGURE= yes
CONFIGURE_ENV= DATADIRNAME="share"
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
INSTALL_TARGET= install-strip
CONFIGURE_ENV= DATADIRNAME="share"
LDFLAGS+= -L${LOCALBASE}/lib
# fix: "ld: error: undefined reference due to --no-allow-shlib-undefined: environ"
# by adding "-Wl,--allow-shlib-undefined" (not needed on 1500014 as I tested)
LDFLAGS+= -Wl,--allow-shlib-undefined -L${LOCALBASE}/lib -lintl
OPTIONS_DEFINE= DOCS NLS FFTW
PORTDOCS= *
OPTIONS_DEFINE= DOCS FFTW NLS
OPTIONS_DEFAULT= FFTW JACK
OPTIONS_GROUP= SOUND
OPTIONS_GROUP_SOUND= ALSA JACK PULSEAUDIO
OPTIONS_DEFAULT= JACK NLS FFTW
OPTIONS_SUB= YES
OPTIONS_SUB= yes
ALSA_LIB_DEPENDS= libasound.so:audio/alsa-lib
ALSA_RUN_DEPENDS= ${LOCALBASE}/lib/alsa-lib/libasound_module_pcm_oss.so:audio/alsa-plugins
ALSA_CONFIGURE_ENABLE= alsa
ALSA_CONFIGURE_WITH= alsa
JACK_LIB_DEPENDS= libjack.so:audio/jack \
libsamplerate.so:audio/libsamplerate
JACK_CONFIGURE_ENABLE= jack
FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \
libfftw3f.so:math/fftw3-float
FFTW_CONFIGURE_WITH= fftw
FFTW_LIB_DEPENDS= libfftw3f.so:math/fftw3-float
FFTW_CONFIGURE_ENABLE= libfftw
JACK_LIB_DEPENDS= libjack.so:audio/jack
JACK_CONFIGURE_WITH= jack
PULSEAUDIO_LIB_DEPENDS= libpulse.so:audio/pulseaudio
PULSEAUDIO_CONFIGURE_ENABLE= pulseaudio
NLS_USES= gettext
NLS_CONFIGURE_ENABLE= nls
PULSEAUDIO_LIB_DEPENDS= libpulse.so:audio/pulseaudio
PULSEAUDIO_CONFIGURE_WITH= pulseaudio
.include <bsd.port.mk>

6
audio/lingot/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1572589592
SHA256 (lingot-1.0.1.tar.gz) = 71b8c77bb988e8384a0ecbf4c861d838f7b985284a8e18f75532ab9816c6a00f
SIZE (lingot-1.0.1.tar.gz) = 510112
TIMESTAMP = 1709377221
SHA256 (lingot-1.1.1.tar.gz) = c4f97e496a3666c70786d136e6f2ccc5e8a3813eb08cda35cacd7eb0d16f4d56
SIZE (lingot-1.1.1.tar.gz) = 727028

18
audio/lingot/files/patch-Makefile.in
View File

@ -1,18 +0,0 @@
--- Makefile.in.orig 2019-11-01 06:36:02 UTC
+++ Makefile.in
@@ -423,7 +423,6 @@ ACLOCAL_AMFLAGS = -I m4
lingotdocdir = ${docdir}
lingotdoc_DATA = \
README \
- COPYING \
AUTHORS \
ChangeLog \
NEWS \
@@ -446,6 +445,7 @@ appdatadir = $(datadir)/metainfo
appdata_DATA = org.nongnu.lingot.appdata.xml
dist_man_MANS = lingot.1
EXTRA_DIST = \
+ COPYING \
$(lingotdoc_DATA) \
$(appdata_DATA) \
build-aux/gitlog-to-changelog \

21
audio/lingot/pkg-plist
View File

@ -1,10 +1,21 @@
bin/lingot
include/lingot/lingot-audio-alsa.h
include/lingot/lingot-audio-jack.h
include/lingot/lingot-audio-oss.h
include/lingot/lingot-audio-pulseaudio.h
include/lingot/lingot-audio.h
include/lingot/lingot-config-scale.h
include/lingot/lingot-config.h
include/lingot/lingot-core.h
include/lingot/lingot-defs.h
include/lingot/lingot-filter.h
include/lingot/lingot-msg.h
lib/liblingot.a
lib/liblingot.so
lib/liblingot.so.0
lib/liblingot.so.0.0.0
libdata/pkgconfig/lingot.pc
share/applications/org.nongnu.lingot.desktop
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
%%PORTDOCS%%%%DOCSDIR%%/ChangeLog
%%PORTDOCS%%%%DOCSDIR%%/NEWS
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/THANKS
share/icons/hicolor/scalable/apps/org.nongnu.lingot.svg
%%NLS%%share/locale/ca/LC_MESSAGES/lingot.mo
%%NLS%%share/locale/cs/LC_MESSAGES/lingot.mo

6
audio/plasma6-kpipewire/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1704999591
SHA256 (KDE/plasma/5.92.0/kpipewire-5.92.0.tar.xz) = 89537ab244584e76dda97857a548b5f6d143383a496c5c4068a0c18b5930483f
SIZE (KDE/plasma/5.92.0/kpipewire-5.92.0.tar.xz) = 144580
TIMESTAMP = 1708670266
SHA256 (KDE/plasma/6.0.0/kpipewire-6.0.0.tar.xz) = dd585ee4de3b5bcdc10f36fe5df91966447ca716570d6b4ea15160db1f1d73bc
SIZE (KDE/plasma/6.0.0/kpipewire-6.0.0.tar.xz) = 144816

1
audio/plasma6-kpipewire/pkg-plist
View File

@ -6,6 +6,7 @@ include/KPipeWire/PipeWireSourceItem
include/KPipeWire/PipeWireSourceStream
include/KPipeWire/dmabufhandler.h
include/KPipeWire/kpipewire_export.h
include/KPipeWire/kpipewire_version.h
include/KPipeWire/kpipewiredmabuf_export.h
include/KPipeWire/pipewirebaseencodedstream.h
include/KPipeWire/pipewireencodedstream.h

6
audio/plasma6-ocean-sound-theme/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1704999591
SHA256 (KDE/plasma/5.92.0/ocean-sound-theme-5.92.0.tar.xz) = 8809fc04b539cac514b8aa9dbf1a91da1b828bfc60e6c12d401c355848d3f87f
SIZE (KDE/plasma/5.92.0/ocean-sound-theme-5.92.0.tar.xz) = 1209724
TIMESTAMP = 1708670266
SHA256 (KDE/plasma/6.0.0/ocean-sound-theme-6.0.0.tar.xz) = 22a0edca869c79b49be5a255b6c3dfb0d2584c9ef68dbb7906138a7c96f679fa
SIZE (KDE/plasma/6.0.0/ocean-sound-theme-6.0.0.tar.xz) = 1209632

6
audio/plasma6-oxygen-sounds/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1704999592
SHA256 (KDE/plasma/5.92.0/oxygen-sounds-5.92.0.tar.xz) = c4155f623e9a4377967f84d6584653829579cd05447346c63c970373dcabdc4d
SIZE (KDE/plasma/5.92.0/oxygen-sounds-5.92.0.tar.xz) = 1936568
TIMESTAMP = 1708670267
SHA256 (KDE/plasma/6.0.0/oxygen-sounds-6.0.0.tar.xz) = 7565ae1ecc6d395bcaf43687eff94f56eda8a4289d0c6ff5f4a5751391c6e58f
SIZE (KDE/plasma/6.0.0/oxygen-sounds-6.0.0.tar.xz) = 1935976

6
audio/plasma6-plasma-pa/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1704999593
SHA256 (KDE/plasma/5.92.0/plasma-pa-5.92.0.tar.xz) = 8c65a2f384f6948712e13560f6bccf8906a7d210e61a19580d660d7b5c5edecd
SIZE (KDE/plasma/5.92.0/plasma-pa-5.92.0.tar.xz) = 170072
TIMESTAMP = 1708670267
SHA256 (KDE/plasma/6.0.0/plasma-pa-6.0.0.tar.xz) = b49abb2bb74401b22cdae1d992101d764b483a18c60087c202f6e695145d022c
SIZE (KDE/plasma/6.0.0/plasma-pa-6.0.0.tar.xz) = 170212

22
audio/rawrec/Makefile
View File

@ -1,33 +1,35 @@
PORTNAME= rawrec
PORTVERSION= 0.9.991
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= audio
MASTER_SITES= SUNSITE/apps/sound/recorders \
SF/${PORTNAME}/${PORTNAME}/${PORTNAME}-${PORTVERSION}
MAINTAINER= antonfb@hesiod.org
COMMENT= Utility to record and playback raw audio data
WWW= http://rawrec.sourceforge.net/
WWW= https://sourceforge.net/projects/rawrec/
LICENSE= GPLv2+
LICENSE_FILE= ${WRKDIR}/${DISTNAME}/copyright
USES= gmake
WRKSRC= ${WRKDIR}/${DISTNAME}/src
USES= gmake
MAKE_ARGS= CC="${CC}" CFLAGS="${CPPFLAGS} ${CFLAGS}" \
MAKE_ARGS= CC="${CC}" \
CFLAGS="${CPPFLAGS} ${CFLAGS}" \
LDFLAGS="${LDFLAGS} -lm -lpthread"
PLIST_FILES= bin/rawplay bin/rawrec share/man/man1/rawplay.1.gz share/man/man1/rawrec.1.gz
post-patch:
@${FIND} ${WRKSRC} -name '*.[ch]' | ${XARGS} ${REINPLACE_CMD} -e \
's|<linux/soundcard.h>|<sys/soundcard.h>|g'
PLIST_FILES= bin/rawplay \
bin/rawrec \
share/man/man1/rawplay.1.gz \
share/man/man1/rawrec.1.gz
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/rawrec ${STAGEDIR}${PREFIX}/bin
${LN} -sf rawrec ${STAGEDIR}${PREFIX}/bin/rawplay
${INSTALL_MAN} ${WRKSRC}/../docs/user/rawrec.1 ${STAGEDIR}${PREFIX}/share/man/man1
${INSTALL_MAN} ${WRKSRC}/../docs/user/rawrec.1 \
${STAGEDIR}${PREFIX}/share/man/man1
${LN} -sf rawrec.1 ${STAGEDIR}${PREFIX}/share/man/man1/rawplay.1
.include <bsd.port.mk>

11
audio/rawrec/files/patch-audio__init.c Normal file
View File

@ -0,0 +1,11 @@
--- audio_init.c.orig 2006-01-05 17:36:27 UTC
+++ audio_init.c
@@ -20,7 +20,7 @@
#include <fcntl.h>
#include <sys/types.h>
#include <sys/ioctl.h>
-#include <linux/soundcard.h>
+#include <sys/soundcard.h>
#include "rawrec.h"

11
audio/rawrec/files/patch-get__au__blksz.c Normal file
View File

@ -0,0 +1,11 @@
--- get_au_blksz.c.orig 2006-01-05 17:36:27 UTC
+++ get_au_blksz.c
@@ -8,7 +8,7 @@
#include <stdlib.h>
#include <string.h>
#include <sys/ioctl.h>
-#include <linux/soundcard.h>
+#include <sys/soundcard.h>
#include "rawrec.h"

11
audio/rawrec/files/patch-get__format__code.c Normal file
View File

@ -0,0 +1,11 @@
--- get_format_code.c.orig 2006-01-05 17:36:27 UTC
+++ get_format_code.c
@@ -7,7 +7,7 @@
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
-#include <linux/soundcard.h>
+#include <sys/soundcard.h>
#include "rawrec.h"

20
audio/rawrec/files/patch-main.c
View File

@ -1,23 +1,11 @@
--- main.c.orig 2006-01-22 02:40:17 UTC
+++ main.c
@@ -14,6 +14,12 @@
#include "rawrec.h"
+size_t strnlen (const char *string, size_t maxlen)
+{
+ const char *end = memchr (string, '\0', maxlen);
+ return end ? (size_t) (end - string) : maxlen;
+}
+
int main(int argc, char *argv[])
{
/* Action for ignoring signals we don't want to deal with. */
@@ -118,6 +124,7 @@ int main(int argc, char *argv[])
strncpy(cnst_dflt_format, "s16_le", (size_t) (MAX_FORMAT_STRING_LENGTH + 1));
@@ -119,6 +119,8 @@ int main(int argc, char *argv[])
/* at the moment, this application goes with the default for most signals */
+ ignorer_act.sa_flags = 0;
ignorer_act.sa_handler = SIG_IGN;
+ ignorer_act.sa_flags = 0;
+ sigemptyset(&ignorer_act.sa_mask);
/* because I'm unclear on how SIGIO is supposed to work, it's not
applicable here, and I'm paranoid */
if ( sigaction(SIGIO, &ignorer_act, NULL) == -1 )

49
audio/rawrec/files/patch-play.c
View File

@ -1,49 +0,0 @@
--- play.c.orig 2006-01-22 02:40:17 UTC
+++ play.c
@@ -54,7 +54,6 @@ void play(parameters_stt *clp) /* pneumo
int rtn; /* For return values of pthread fctns. */
/* Maximum priority of FIFO thread. Should always be initialized
elsewhere before use. */
- int fifo_max_prio = 0;
void *au_th_ret; /* Audio thread return pointer. */
void *fd_th_ret; /* File thread return pointer. */
sigset_t all_sigs; /* Full set of all signals. */
@@ -263,6 +262,10 @@ void play(parameters_stt *clp) /* pneumo
PTHREAD_CREATE_JOINABLE)) ) {
err_die("BUG: pthread_attr_setdetachstate failed: %s\n", strerror(rtn));
}
+
+/* This is ugly, but FreeBSD defines _POSIX_THREAD_PRIORITY_SCHEDULING
+ but it does not support PTHREAD_SCOPE_SYSTEM
+
#if defined (_POSIX_THREAD_PRIORITY_SCHEDULING) \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != -1 \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != 0
@@ -282,6 +285,8 @@ void play(parameters_stt *clp) /* pneumo
err_die("BUG: pthread_attr_setscope failed: %s\n", strerror(rtn));
}
#endif
+*/
+
if ( (rtn = pthread_attr_init(&move_fd_attr)) )
err_die("BUG: pthread_attr_init failed: %s\n", strerror(rtn));
if ( (rtn = pthread_attr_setdetachstate(&move_fd_attr,
@@ -289,6 +294,9 @@ void play(parameters_stt *clp) /* pneumo
err_die("BUG: pthread_attr_setdetachstate failed: %s\n", strerror(rtn));
}
+/* This is ugly, but FreeBSD defines _POSIX_THREAD_PRIORITY_SCHEDULING
+ but it does not support PTHREAD_SCOPE_SYSTEM
+
#if defined (_POSIX_THREAD_PRIORITY_SCHEDULING) \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != -1 \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != 0
@@ -306,7 +314,7 @@ void play(parameters_stt *clp) /* pneumo
err_die("BUG: pthread_attr_setscope failed: %s\n", strerror(rtn));
}
#endif
-
+*/
/* Getting ugly. Here we install a handler (which sets a global
flag which the threads can poll in order to do graceful
death). */

47
audio/rawrec/files/patch-record.c
View File

@ -1,47 +0,0 @@
--- record.c.orig 2006-01-22 02:40:17 UTC
+++ record.c
@@ -43,7 +43,6 @@ void record(parameters_stt *clp)
int rtn; /* For return values of pthread fctns. */
/* Maximum priority of FIFO thread. Should always be rinitialized
elsewhere before use. */
- int fifo_max_prio = 0;
void *au_th_ret; /* Audio thread return pointer. */
void *fd_th_ret; /* File thread return pointer. */
sigset_t all_sigs; /* Full set of all signals. */
@@ -183,6 +182,10 @@ void record(parameters_stt *clp)
PTHREAD_CREATE_JOINABLE)) ) {
err_die("BUG: pthread_attr_setdetachstate failed: %s\n", strerror(rtn));
}
+
+/* This is ugly, but FreeBSD defines _POSIX_THREAD_PRIORITY_SCHEDULING
+ but it does not support PTHREAD_SCOPE_SYSTEM
+
#if defined (_POSIX_THREAD_PRIORITY_SCHEDULING) \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != -1 \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != 0
@@ -202,12 +205,17 @@ void record(parameters_stt *clp)
err_die("BUG: pthread_attr_setscope failed: %s\n", strerror(rtn));
}
#endif
+*/
if ( (rtn = pthread_attr_init(&move_fd_attr)) )
err_die("BUG: pthread_attr_init failed: %s\n", strerror(rtn));
if ( (rtn = pthread_attr_setdetachstate(&move_fd_attr,
PTHREAD_CREATE_JOINABLE)) ) {
err_die("BUG: pthread_attr_setdetachstate failed: %s\n", strerror(rtn));
}
+
+/* This is ugly, but FreeBSD defines _POSIX_THREAD_PRIORITY_SCHEDULING
+ but it does not support PTHREAD_SCOPE_SYSTEM
+
#if defined (_POSIX_THREAD_PRIORITY_SCHEDULING) \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != -1 \
&& _POSIX_THREAD_PRIORITY_SCHEDULING != 0
@@ -225,6 +233,7 @@ void record(parameters_stt *clp)
err_die("BUG: pthread_attr_setscope failed: %s\n", strerror(rtn));
}
#endif
+*/
/* Getting ugly. Here we install a handler (which sets a global
flag which the threads can poll in order to do graceful

11
audio/rawrec/files/patch-set__au__blksz.c Normal file
View File

@ -0,0 +1,11 @@
--- set_au_blksz.c.orig 2006-01-05 17:36:27 UTC
+++ set_au_blksz.c
@@ -8,7 +8,7 @@
#include <stdlib.h>
#include <string.h>
#include <sys/ioctl.h>
-#include <linux/soundcard.h>
+#include <sys/soundcard.h>
#include "rawrec.h"

11
audio/rawrec/files/patch-sleep__on__option.c
View File

@ -1,11 +0,0 @@
--- sleep_on_option.c.orig 2006-01-05 17:36:27 UTC
+++ sleep_on_option.c
@@ -15,7 +15,7 @@ void sleep_on_option(double time, double
if ( time > samples / speed ) {
reqst.tv_sec = (time_t) floor(time);
- reqst.tv_nsec = (long) nearbyint((time - floor(time)) * 1000000);
+ reqst.tv_nsec = (long) rint((time - floor(time)) * 1000000);
} else {
reqst.tv_sec = (time_t) floor(samples / speed);
reqst.tv_nsec = (long) rint((samples / speed - floor(samples / speed))

11
audio/rawrec/files/patch-test__dsp__params.c Normal file
View File

@ -0,0 +1,11 @@
--- test_dsp_params.c.orig 2006-01-05 17:36:27 UTC
+++ test_dsp_params.c
@@ -16,7 +16,7 @@
#include <stdlib.h>
#include <unistd.h>
#include <sys/ioctl.h>
-#include <linux/soundcard.h>
+#include <sys/soundcard.h>
#include "rawrec.h"

2
benchmarks/bonnie++/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= bonnie++
PORTVERSION= 1.98
PORTREVISION= 1
CATEGORIES= benchmarks
MASTER_SITES= https://www.coker.com.au/bonnie++/
@ -13,6 +14,7 @@ USES= shebangfix tar:tgz
USE_CXXSTD= c++14
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
SHEBANG_FILES= bon_csv2txt.in
PORTDOCS= readme.html

12
benchmarks/bonnie++/pkg-plist
View File

@ -5,9 +5,9 @@ sbin/bonnie++
sbin/getc_putc
sbin/getc_putc_helper
sbin/zcav
man/man1/bon_csv2html.1.gz
man/man1/bon_csv2txt.1.gz
man/man1/generate_randfile.1.gz
man/man8/bonnie++.8.gz
man/man8/getc_putc.8.gz
man/man8/zcav.8.gz
share/man/man1/bon_csv2html.1.gz
share/man/man1/bon_csv2txt.1.gz
share/man/man1/generate_randfile.1.gz
share/man/man8/bonnie++.8.gz
share/man/man8/getc_putc.8.gz
share/man/man8/zcav.8.gz

5
benchmarks/ior/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= ior
DISTVERSION= 3.3.0-20230112
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= benchmarks
MAINTAINER= yuri@FreeBSD.org
@ -16,13 +16,14 @@ GH_ACCOUNT= hpc
GH_TAGNAME= 24d5d41
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
TEST_TARGET= check
PLIST_FILES= bin/ior \
bin/md-workbench \
bin/mdtest \
man/man1/mdtest.1.gz
share/man/man1/mdtest.1.gz
post-install: # see https://github.com/hpc/ior/issues/454
@${RM} \

2
benchmarks/kdiskmark/Makefile
View File

@ -8,7 +8,7 @@ WWW= https://github.com/JonMagon/KDiskMark
LICENSE= GPLv3
LIB_DEPENDS= libpolkit-qt5-core-1.so:sysutils/polkit-qt
LIB_DEPENDS= libpolkit-qt5-core-1.so:sysutils/polkit-qt-1@qt5
RUN_DEPENDS= fio:benchmarks/fio
USE_GITHUB= yes

6
benchmarks/mst-bench/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= MST-Bench
DISTVERSION= 0.2.2
PORTREVISION= 1
CATEGORIES= benchmarks
MAINTAINER= jwb@FreeBSD.org
@ -10,9 +11,10 @@ LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
USE_GITHUB= yes
GH_ACCOUNT= outpaddling
PLIST_FILES= bin/mst-bench man/man1/mst-bench.1.gz
MAKE_ARGS= MANDIR=${PREFIX}/share/man
PLIST_FILES= bin/mst-bench share/man/man1/mst-bench.1.gz
.include <bsd.port.mk>

3
benchmarks/netperf/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= netperf
PORTVERSION= 2.7.1.p20210121
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= benchmarks
MAINTAINER= marius@FreeBSD.org
@ -25,6 +25,7 @@ SOCKETS_DESC= Enable Unix Domain socket support
USE_CSTD= gnu89
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
CONFIGURE_ARGS= --enable-burst --enable-demo --enable-dirty --enable-intervals
CFLAGS+= -fcommon

4
benchmarks/netperf/pkg-plist
View File

@ -1,7 +1,7 @@
bin/netperf
bin/netserver
man/man1/netperf.1.gz
man/man1/netserver.1.gz
share/man/man1/netperf.1.gz
share/man/man1/netserver.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arr_script
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bloat.sh
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/find_max_burst.sh

2
benchmarks/phoronix-test-suite/Makefile
View File

@ -1,7 +1,7 @@
PORTNAME= phoronix-test-suite
DISTVERSIONPREFIX= v
DISTVERSION= 10.8.4
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= benchmarks
PKGNAMESUFFIX= ${PHP_PKGNAMESUFFIX}

24
benchmarks/phoronix-test-suite/files/patch-install-sh
View File

@ -1,6 +1,6 @@
--- install-sh.orig 2016-01-01 16:41:58 UTC
--- install-sh.orig 2022-07-03 10:17:29 UTC
+++ install-sh
@@ -47,16 +47,21 @@ then
@@ -47,16 +47,21 @@ rm -rf $DESTDIR$INSTALL_PREFIX/share/phoronix-test-sui
fi
rm -rf $DESTDIR$INSTALL_PREFIX/share/phoronix-test-suite/
@ -12,9 +12,8 @@
mkdir -p $DESTDIR$INSTALL_PREFIX/share/appdata/
mkdir -p $DESTDIR$INSTALL_PREFIX/share/applications/
mkdir -p $DESTDIR$INSTALL_PREFIX/share/icons/hicolor/48x48/apps/
-mkdir -p $DESTDIR$INSTALL_PREFIX/share/man/man1/
+fi
+mkdir -p $DESTDIR$INSTALL_PREFIX/man/man1/
mkdir -p $DESTDIR$INSTALL_PREFIX/share/man/man1/
mkdir -p $DESTDIR$INSTALL_PREFIX/share/phoronix-test-suite/
mkdir -p $DESTDIR$INSTALL_PREFIX/share/doc/phoronix-test-suite/
-mkdir -p $DESTDIR$INSTALL_PREFIX/../etc/bash_completion.d/
@ -25,13 +24,11 @@
#mkdir -p $DESTDIR$INSTALL_PREFIX/../usr/lib/systemd/system/
#mkdir -p $DESTDIR$INSTALL_PREFIX/../etc/init/
@@ -69,15 +74,18 @@ cp -r * $DESTDIR$INSTALL_PREFIX/share/do
cd ..
@@ -70,15 +75,18 @@ cp documentation/man-pages/*.1 $DESTDIR$INSTALL_PREFIX
rm -rf $DESTDIR$INSTALL_PREFIX/share/doc/phoronix-test-suite/man-pages/
-cp documentation/man-pages/*.1 $DESTDIR$INSTALL_PREFIX/share/man/man1/
cp documentation/man-pages/*.1 $DESTDIR$INSTALL_PREFIX/share/man/man1/
-cp pts-core/static/bash_completion $DESTDIR$INSTALL_PREFIX/../etc/bash_completion.d/phoronix-test-suite
+cp documentation/man-pages/*.1 $DESTDIR$INSTALL_PREFIX/man/man1/
+if [ -n "$WITH_BASH_COMPLETIONS" ]
+then
+cp pts-core/static/bash_completion $DESTDIR$INSTALL_PREFIX/etc/bash_completion.d/phoronix-test-suite
@ -42,14 +39,15 @@
cp pts-core/static/phoronix-test-suite.desktop $DESTDIR$INSTALL_PREFIX/share/applications/
cp pts-core/static/phoronix-test-suite-launcher.desktop $DESTDIR$INSTALL_PREFIX/share/applications/
cp pts-core/static/phoronix-test-suite.appdata.xml $DESTDIR$INSTALL_PREFIX/share/appdata/
-
-mkdir -p $DESTDIR$INSTALL_PREFIX/../usr/lib/systemd/system/
-cp deploy/*-systemd/*.service $DESTDIR$INSTALL_PREFIX/../usr/lib/systemd/system/
+fi
-mkdir -p $DESTDIR$INSTALL_PREFIX/../usr/lib/systemd/system/
-cp deploy/*-systemd/*.service $DESTDIR$INSTALL_PREFIX/../usr/lib/systemd/system/
-
# mkdir -p $DESTDIR$INSTALL_PREFIX/../etc/init/
# cp pts-core/static/upstart/*.conf $DESTDIR$INSTALL_PREFIX/../etc/init/
@@ -92,12 +100,13 @@ rm -f $DESTDIR$INSTALL_PREFIX/share/phor
@@ -93,12 +101,13 @@ rm -f $DESTDIR$INSTALL_PREFIX/share/phoronix-test-suit
rm -f $DESTDIR$INSTALL_PREFIX/share/phoronix-test-suite/pts-core/static/images/openbenchmarking.png
rm -f $DESTDIR$INSTALL_PREFIX/share/phoronix-test-suite/pts-core/static/images/%phoronix-test-suite.png
@ -64,7 +62,7 @@
# XDG MIME OpenBenchmarking support
if [ "X$DESTDIR" = "X" ] && which xdg-mime >/dev/null && which xdg-icon-resource >/dev/null
then
@@ -112,15 +121,14 @@ else
@@ -113,15 +122,14 @@ fi
cp pts-core/static/images/openbenchmarking.png $DESTDIR$INSTALL_PREFIX/share/icons/hicolor/64x64/mimetypes/application-x-openbenchmarking.png
fi

2
benchmarks/phoronix-test-suite/pkg-plist
View File

@ -6,4 +6,4 @@ bin/phoronix-test-suite
%%X11%%share/icons/hicolor/48x48/apps/phoronix-test-suite.png
%%X11%%share/icons/hicolor/64x64/mimetypes/application-x-openbenchmarking.png
%%X11%%share/mime/packages/openbenchmarking-mime.xml
man/man1/phoronix-test-suite.1.gz
share/man/man1/phoronix-test-suite.1.gz

6
benchmarks/sipp/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= sipp
PORTVERSION= 3.5.1
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= benchmarks net
MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/v${PORTVERSION}/
@ -14,7 +14,7 @@ BUILD_DEPENDS= help2man:misc/help2man
USES= autoreconf compiler:c++11-lang gmake ncurses pkgconfig
PLIST_FILES= bin/sipp man/man1/sipp.1.gz
PLIST_FILES= bin/sipp share/man/man1/sipp.1.gz
GNU_CONFIGURE= yes
@ -52,7 +52,7 @@ post-patch-PCAP-on:
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${STAGEDIR}${PREFIX}/bin
${INSTALL_MAN} ${WRKSRC}/include/sipp.1 ${STAGEDIR}${PREFIX}/man/man1
${INSTALL_MAN} ${WRKSRC}/include/sipp.1 ${STAGEDIR}${PREFIX}/share/man/man1
do-install-PCAP-on:
${MKDIR} ${STAGEDIR}${DATADIR}/pcap

3
benchmarks/ttcp/Makefile
View File

@ -1,7 +1,8 @@
PORTNAME= ttcp
DISTVERSIONPREFIX= ${PORTNAME}-
PORTVERSION= 1.13
CATEGORIES= benchmarks net
MASTER_SITES= https://codeberg.org/BSDforge/${PORTNAME}/archive/
MASTER_SITES= https://codeberg.org/BSDforge/${PORTNAME}/archive/${DISTVERSIONFULL}${EXTRACT_SUFX}?dummy=/
MAINTAINER= portmaster@BSDforge.com
COMMENT= Benchmarking tool for analysing TCP and UDP performance

6
benchmarks/ttcp/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1706864630
SHA256 (ttcp-1.13.tar.gz) = 809214c535175139897afba784e2e6d1eff02efc3d7b90a67f1bb52fb5082027
SIZE (ttcp-1.13.tar.gz) = 10959
TIMESTAMP = 1709490744
SHA256 (ttcp-ttcp-1.13.tar.gz) = 809214c535175139897afba784e2e6d1eff02efc3d7b90a67f1bb52fb5082027
SIZE (ttcp-ttcp-1.13.tar.gz) = 10959

3
benchmarks/vkmark/Makefile
View File

@ -14,7 +14,8 @@ WWW= https://github.com/vkmark/vkmark
LICENSE= LGPL21+
LICENSE_FILE= ${WRKSRC}/COPYING-LGPL2.1
BUILD_DEPENDS= vulkan-headers>0:graphics/vulkan-headers \
BUILD_DEPENDS= cmake:devel/cmake-core \
vulkan-headers>0:graphics/vulkan-headers \
glm>0:math/glm
LIB_DEPENDS= libvulkan.so:graphics/vulkan-loader \
libassimp.so:multimedia/assimp

3
biology/abyss/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= abyss
DISTVERSION= 2.3.7
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
@ -34,6 +34,7 @@ make_CMD= ${PREFIX}/bin/gmake
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453

2
biology/abyss/pkg-plist
View File

@ -55,4 +55,4 @@ bin/abyss-todot
bin/abyss-tofastq
bin/konnector
bin/logcounter
man/man1/abyss-sealer.1.gz
share/man/man1/abyss-sealer.1.gz

4
biology/ad2vcf/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= ad2vcf
DISTVERSION= 0.1.6
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -14,8 +15,9 @@ LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend
USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ARGS= MANPREFIX=${PREFIX}/share
MAKE_ENV+= VERSION=${PORTVERSION}
PLIST_FILES= bin/ad2vcf man/man1/ad2vcf.1.gz
PLIST_FILES= bin/ad2vcf share/man/man1/ad2vcf.1.gz
pre-build:
(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)

2
biology/bcftools/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= bcftools
PORTVERSION= 1.17
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -20,6 +21,7 @@ USE_PERL5= test
GH_ACCOUNT= samtools
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
SHEBANG_FILES= misc/* test/test.pl
OPTIONS_DEFINE= GPL

2
biology/bcftools/pkg-plist
View File

@ -46,4 +46,4 @@ libexec/bcftools/trio-stats.so
libexec/bcftools/trio-switch-rate.so
libexec/bcftools/variant-distance.so
libexec/bcftools/variantkey-hex.so
man/man1/bcftools.1.gz
share/man/man1/bcftools.1.gz

2
biology/biolibc-tools/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= biolibc-tools
DISTVERSION= 0.1.4-13
DISTVERSIONSUFFIX= -g0375b83
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -19,6 +20,7 @@ USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ARGS= MANPREFIX=${PREFIX}/share
MAKE_ENV= VERSION=${PORTVERSION}
INSTALL_TARGET= install-strip

28
biology/biolibc-tools/pkg-plist
View File

@ -13,17 +13,17 @@ libexec/biolibc-tools/gff3-to-bed
libexec/biolibc-tools/uniq-seqs.awk
libexec/biolibc-tools/vcf-downsample
libexec/biolibc-tools/vcf-search
man/man1/blt-chrom-lens.1.gz
man/man1/blt-deromanize.1.gz
man/man1/blt-ensemblid2gene.1.gz
man/man1/blt-extract-seq.1.gz
man/man1/blt-fasta2seq.1.gz
man/man1/blt-fastq-derep.sh.1.gz
man/man1/blt-fastx-derep.1.gz
man/man1/blt-fastx-stats.1.gz
man/man1/blt-fastx2tsv.1.gz
man/man1/blt-find-orfs.1.gz
man/man1/blt-gff3-to-bed.1.gz
man/man1/blt-vcf-downsample.1.gz
man/man1/blt-vcf-search.1.gz
man/man1/blt.1.gz
share/man/man1/blt-chrom-lens.1.gz
share/man/man1/blt-deromanize.1.gz
share/man/man1/blt-ensemblid2gene.1.gz
share/man/man1/blt-extract-seq.1.gz
share/man/man1/blt-fasta2seq.1.gz
share/man/man1/blt-fastq-derep.sh.1.gz
share/man/man1/blt-fastx-derep.1.gz
share/man/man1/blt-fastx-stats.1.gz
share/man/man1/blt-fastx2tsv.1.gz
share/man/man1/blt-find-orfs.1.gz
share/man/man1/blt-gff3-to-bed.1.gz
share/man/man1/blt-vcf-downsample.1.gz
share/man/man1/blt-vcf-search.1.gz
share/man/man1/blt.1.gz

3
biology/biosig/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= biosig
DISTVERSION= 2.5.2
PORTREVISION= 7
PORTREVISION= 8
CATEGORIES= biology
MASTER_SITES= SF/${PORTNAME}/BioSig%20for%20C_C%2B%2B/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}.src
@ -23,6 +23,7 @@ USE_LDCONFIG= yes
WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION}
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
CFLAGS+= -D__BYTE_ORDER=BYTE_ORDER -D__LITTLE_ENDIAN=LITTLE_ENDIAN -D__BIG_ENDIAN=BIG_ENDIAN \
-Dbswap_16=bswap16 -Dbswap_32=bswap32 -Dbswap_64=bswap64

22
biology/biosig/pkg-plist
View File

@ -17,17 +17,17 @@ lib/libbiosig.so
lib/libbiosig.so.3
lib/libphysicalunits.a
libdata/pkgconfig/libbiosig.pc
man/man1/bin2rec.1.gz
man/man1/biosig2gdf.1.gz
man/man1/biosig_fhir.1.gz
man/man1/heka2itx.1.gz
man/man1/mexSLOAD.1.gz
man/man1/physicalunits.1.gz
man/man1/rec2bin.1.gz
man/man1/save2aecg.1.gz
man/man1/save2gdf.1.gz
man/man1/save2scp.1.gz
man/man1/sigviewer.1.gz
share/man/man1/bin2rec.1.gz
share/man/man1/biosig2gdf.1.gz
share/man/man1/biosig_fhir.1.gz
share/man/man1/heka2itx.1.gz
share/man/man1/mexSLOAD.1.gz
share/man/man1/physicalunits.1.gz
share/man/man1/rec2bin.1.gz
share/man/man1/save2aecg.1.gz
share/man/man1/save2gdf.1.gz
share/man/man1/save2scp.1.gz
share/man/man1/sigviewer.1.gz
%%DATADIR%%/matlab/Contents.m
%%DATADIR%%/matlab/INDEX
%%DATADIR%%/matlab/INSTALL

2
biology/fasda/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= fasda
DISTVERSION= 0.1.5
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -17,6 +18,7 @@ USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ARGS= MANPREFIX=${PREFIX}/share
MAKE_ENV= VERSION=${PORTVERSION}
INSTALL_TARGET= install-strip

10
biology/fasda/pkg-plist
View File

@ -3,8 +3,8 @@ libexec/fasda/abundance
libexec/fasda/fold-change
libexec/fasda/normalize
libexec/fasda/pval-sim
man/man1/fasda-abundance.1.gz
man/man1/fasda-fold-change.1.gz
man/man1/fasda-normalize.1.gz
man/man1/fasda-pval-sim.1.gz
man/man1/fasda.1.gz
share/man/man1/fasda-abundance.1.gz
share/man/man1/fasda-fold-change.1.gz
share/man/man1/fasda-normalize.1.gz
share/man/man1/fasda-pval-sim.1.gz
share/man/man1/fasda.1.gz

3
biology/fastq-trim/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= fastq-trim
DISTVERSION= 0.1.3
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -15,7 +16,7 @@ USE_GITHUB= yes
GH_ACCOUNT= outpaddling
MAKE_ENV= VERSION=${PORTVERSION}
MAKE_ENV= VERSION=${PORTVERSION} MANPREFIX=${PREFIX}/share
pre-build:
(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)

136
biology/fastq-trim/pkg-plist
View File

@ -5,71 +5,71 @@ include/fastq-trim-mutators.h
include/fastq-trim-rvs.h
include/fastq-trim.h
lib/libfastq-trim.a
man/man1/fastq-scum.1.gz
man/man1/fastq-trim.1.gz
man/man3/FASTQ_TRIM_ADAPTER1.3.gz
man/man3/FASTQ_TRIM_ADAPTER1_AE.3.gz
man/man3/FASTQ_TRIM_ADAPTER2.3.gz
man/man3/FASTQ_TRIM_ADAPTER2_AE.3.gz
man/man3/FASTQ_TRIM_ADAPTER_MATCH_FUNCTION.3.gz
man/man3/FASTQ_TRIM_INFILE1.3.gz
man/man3/FASTQ_TRIM_INFILE1_AE.3.gz
man/man3/FASTQ_TRIM_INFILE2.3.gz
man/man3/FASTQ_TRIM_INFILE2_AE.3.gz
man/man3/FASTQ_TRIM_INSTREAM1.3.gz
man/man3/FASTQ_TRIM_INSTREAM1_AE.3.gz
man/man3/FASTQ_TRIM_INSTREAM2.3.gz
man/man3/FASTQ_TRIM_INSTREAM2_AE.3.gz
man/man3/FASTQ_TRIM_MAX_MISMATCH_PERCENT.3.gz
man/man3/FASTQ_TRIM_MIN_LENGTH.3.gz
man/man3/FASTQ_TRIM_MIN_MATCH.3.gz
man/man3/FASTQ_TRIM_MIN_QUAL.3.gz
man/man3/FASTQ_TRIM_OUTFILE1.3.gz
man/man3/FASTQ_TRIM_OUTFILE1_AE.3.gz
man/man3/FASTQ_TRIM_OUTFILE2.3.gz
man/man3/FASTQ_TRIM_OUTFILE2_AE.3.gz
man/man3/FASTQ_TRIM_OUTSTREAM1.3.gz
man/man3/FASTQ_TRIM_OUTSTREAM1_AE.3.gz
man/man3/FASTQ_TRIM_OUTSTREAM2.3.gz
man/man3/FASTQ_TRIM_OUTSTREAM2_AE.3.gz
man/man3/FASTQ_TRIM_PHRED_BASE.3.gz
man/man3/FASTQ_TRIM_POLYA_MIN_LEN.3.gz
man/man3/FASTQ_TRIM_VERBOSE.3.gz
man/man3/fastq_trim_set_adapter1.3.gz
man/man3/fastq_trim_set_adapter1_ae.3.gz
man/man3/fastq_trim_set_adapter1_cpy.3.gz
man/man3/fastq_trim_set_adapter2.3.gz
man/man3/fastq_trim_set_adapter2_ae.3.gz
man/man3/fastq_trim_set_adapter2_cpy.3.gz
man/man3/fastq_trim_set_adapter_match_function.3.gz
man/man3/fastq_trim_set_infile1.3.gz
man/man3/fastq_trim_set_infile1_ae.3.gz
man/man3/fastq_trim_set_infile1_cpy.3.gz
man/man3/fastq_trim_set_infile2.3.gz
man/man3/fastq_trim_set_infile2_ae.3.gz
man/man3/fastq_trim_set_infile2_cpy.3.gz
man/man3/fastq_trim_set_instream1.3.gz
man/man3/fastq_trim_set_instream1_ae.3.gz
man/man3/fastq_trim_set_instream1_cpy.3.gz
man/man3/fastq_trim_set_instream2.3.gz
man/man3/fastq_trim_set_instream2_ae.3.gz
man/man3/fastq_trim_set_instream2_cpy.3.gz
man/man3/fastq_trim_set_max_mismatch_percent.3.gz
man/man3/fastq_trim_set_min_length.3.gz
man/man3/fastq_trim_set_min_match.3.gz
man/man3/fastq_trim_set_min_qual.3.gz
man/man3/fastq_trim_set_outfile1.3.gz
man/man3/fastq_trim_set_outfile1_ae.3.gz
man/man3/fastq_trim_set_outfile1_cpy.3.gz
man/man3/fastq_trim_set_outfile2.3.gz
man/man3/fastq_trim_set_outfile2_ae.3.gz
man/man3/fastq_trim_set_outfile2_cpy.3.gz
man/man3/fastq_trim_set_outstream1.3.gz
man/man3/fastq_trim_set_outstream1_ae.3.gz
man/man3/fastq_trim_set_outstream1_cpy.3.gz
man/man3/fastq_trim_set_outstream2.3.gz
man/man3/fastq_trim_set_outstream2_ae.3.gz
man/man3/fastq_trim_set_outstream2_cpy.3.gz
man/man3/fastq_trim_set_phred_base.3.gz
man/man3/fastq_trim_set_polya_min_len.3.gz
man/man3/fastq_trim_set_verbose.3.gz
share/man/man1/fastq-scum.1.gz
share/man/man1/fastq-trim.1.gz
share/man/man3/FASTQ_TRIM_ADAPTER1.3.gz
share/man/man3/FASTQ_TRIM_ADAPTER1_AE.3.gz
share/man/man3/FASTQ_TRIM_ADAPTER2.3.gz
share/man/man3/FASTQ_TRIM_ADAPTER2_AE.3.gz
share/man/man3/FASTQ_TRIM_ADAPTER_MATCH_FUNCTION.3.gz
share/man/man3/FASTQ_TRIM_INFILE1.3.gz
share/man/man3/FASTQ_TRIM_INFILE1_AE.3.gz
share/man/man3/FASTQ_TRIM_INFILE2.3.gz
share/man/man3/FASTQ_TRIM_INFILE2_AE.3.gz
share/man/man3/FASTQ_TRIM_INSTREAM1.3.gz
share/man/man3/FASTQ_TRIM_INSTREAM1_AE.3.gz
share/man/man3/FASTQ_TRIM_INSTREAM2.3.gz
share/man/man3/FASTQ_TRIM_INSTREAM2_AE.3.gz
share/man/man3/FASTQ_TRIM_MAX_MISMATCH_PERCENT.3.gz
share/man/man3/FASTQ_TRIM_MIN_LENGTH.3.gz
share/man/man3/FASTQ_TRIM_MIN_MATCH.3.gz
share/man/man3/FASTQ_TRIM_MIN_QUAL.3.gz
share/man/man3/FASTQ_TRIM_OUTFILE1.3.gz
share/man/man3/FASTQ_TRIM_OUTFILE1_AE.3.gz
share/man/man3/FASTQ_TRIM_OUTFILE2.3.gz
share/man/man3/FASTQ_TRIM_OUTFILE2_AE.3.gz
share/man/man3/FASTQ_TRIM_OUTSTREAM1.3.gz
share/man/man3/FASTQ_TRIM_OUTSTREAM1_AE.3.gz
share/man/man3/FASTQ_TRIM_OUTSTREAM2.3.gz
share/man/man3/FASTQ_TRIM_OUTSTREAM2_AE.3.gz
share/man/man3/FASTQ_TRIM_PHRED_BASE.3.gz
share/man/man3/FASTQ_TRIM_POLYA_MIN_LEN.3.gz
share/man/man3/FASTQ_TRIM_VERBOSE.3.gz
share/man/man3/fastq_trim_set_adapter1.3.gz
share/man/man3/fastq_trim_set_adapter1_ae.3.gz
share/man/man3/fastq_trim_set_adapter1_cpy.3.gz
share/man/man3/fastq_trim_set_adapter2.3.gz
share/man/man3/fastq_trim_set_adapter2_ae.3.gz
share/man/man3/fastq_trim_set_adapter2_cpy.3.gz
share/man/man3/fastq_trim_set_adapter_match_function.3.gz
share/man/man3/fastq_trim_set_infile1.3.gz
share/man/man3/fastq_trim_set_infile1_ae.3.gz
share/man/man3/fastq_trim_set_infile1_cpy.3.gz
share/man/man3/fastq_trim_set_infile2.3.gz
share/man/man3/fastq_trim_set_infile2_ae.3.gz
share/man/man3/fastq_trim_set_infile2_cpy.3.gz
share/man/man3/fastq_trim_set_instream1.3.gz
share/man/man3/fastq_trim_set_instream1_ae.3.gz
share/man/man3/fastq_trim_set_instream1_cpy.3.gz
share/man/man3/fastq_trim_set_instream2.3.gz
share/man/man3/fastq_trim_set_instream2_ae.3.gz
share/man/man3/fastq_trim_set_instream2_cpy.3.gz
share/man/man3/fastq_trim_set_max_mismatch_percent.3.gz
share/man/man3/fastq_trim_set_min_length.3.gz
share/man/man3/fastq_trim_set_min_match.3.gz
share/man/man3/fastq_trim_set_min_qual.3.gz
share/man/man3/fastq_trim_set_outfile1.3.gz
share/man/man3/fastq_trim_set_outfile1_ae.3.gz
share/man/man3/fastq_trim_set_outfile1_cpy.3.gz
share/man/man3/fastq_trim_set_outfile2.3.gz
share/man/man3/fastq_trim_set_outfile2_ae.3.gz
share/man/man3/fastq_trim_set_outfile2_cpy.3.gz
share/man/man3/fastq_trim_set_outstream1.3.gz
share/man/man3/fastq_trim_set_outstream1_ae.3.gz
share/man/man3/fastq_trim_set_outstream1_cpy.3.gz
share/man/man3/fastq_trim_set_outstream2.3.gz
share/man/man3/fastq_trim_set_outstream2_ae.3.gz
share/man/man3/fastq_trim_set_outstream2_cpy.3.gz
share/man/man3/fastq_trim_set_phred_base.3.gz
share/man/man3/fastq_trim_set_polya_min_len.3.gz
share/man/man3/fastq_trim_set_verbose.3.gz

5
biology/generand/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= generand
DISTVERSION= 0.1.2
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -12,6 +13,8 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
USE_GITHUB= yes
GH_ACCOUNT= auerlab
PLIST_FILES= bin/generand man/man1/generand.1.gz
MAKE_ARGS= MANPREFIX=${PREFIX}/share
PLIST_FILES= bin/generand share/man/man1/generand.1.gz
.include <bsd.port.mk>

3
biology/jellyfish/Makefile
View File

@ -1,7 +1,7 @@
PORTNAME= Jellyfish
DISTVERSIONPREFIX= v
DISTVERSION= 2.3.0
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= https://github.com/gmarcais/${PORTNAME}/releases/download/v2.3.0/ # Custom distfile reduces dependencies
DISTNAME= ${PORTNAME:tl}-${DISTVERSION}
@ -21,6 +21,7 @@ USES= compiler:c++11-lib libtool
USE_LDCONFIG= yes
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
INSTALL_TARGET= install-strip
PLIST_SUB= VER=${PORTVERSION}

2
biology/jellyfish/pkg-plist
View File

@ -54,4 +54,4 @@ lib/libjellyfish-2.0.so
lib/libjellyfish-2.0.so.2
lib/libjellyfish-2.0.so.2.0.0
libdata/pkgconfig/jellyfish-2.0.pc
man/man1/jellyfish.1.gz
share/man/man1/jellyfish.1.gz

2
biology/locarna/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= locarna
DISTVERSION= 2.0.0
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://github.com/s-will/LocARNA/releases/download/v${DISTVERSION}/
@ -27,6 +28,7 @@ SHEBANG_FILES= src/Utils/locarna_mcc \
src/Tests/test_programs
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
INSTALL_TARGET= install-strip
TEST_TARGET= check # one test fails, see https://github.com/s-will/LocARNA/issues/81

56
biology/locarna/pkg-plist
View File

@ -103,32 +103,32 @@ lib/perl/MLocarna/Tree.pm
lib/perl/MLocarna/threaded.pm
lib/perl/MLocarna/unthreaded.pm
libdata/pkgconfig/LocARNA-2.0.pc
man/man1/aln-seqs.pl.1.gz
man/man1/aln2fa.pl.1.gz
man/man1/alnsel.pl.1.gz
man/man1/average-dot.pl.1.gz
man/man1/dot2pp.1.gz
man/man1/exparna_p.1.gz
man/man1/exploc_p.1.gz
man/man1/gen-reliab-dot.pl.1.gz
man/man1/locarna-mea.pl.1.gz
man/man1/locarna-motif-scan.1.gz
man/man1/locarna.1.gz
man/man1/locarna_deviation.1.gz
man/man1/locarna_mcc.1.gz
man/man1/locarna_p.1.gz
man/man1/locarna_rnafold_pp.1.gz
man/man1/locarnap-predict-and-plot.pl.1.gz
man/man1/locarnap-realign-all.pl.1.gz
man/man1/locarnap-revcomp.pl.1.gz
man/man1/locarnap-revisit-RNAz-hits.pl.1.gz
man/man1/locarnap_fit.1.gz
man/man1/locarnate.1.gz
man/man1/mlocarna.1.gz
man/man1/mlocarna_nnames.1.gz
man/man1/plot-bmprobs.1.gz
man/man1/pp2dot.1.gz
man/man1/reliability-profile.pl.1.gz
man/man1/ribosum2cc.1.gz
man/man1/sparse.1.gz
share/man/man1/aln-seqs.pl.1.gz
share/man/man1/aln2fa.pl.1.gz
share/man/man1/alnsel.pl.1.gz
share/man/man1/average-dot.pl.1.gz
share/man/man1/dot2pp.1.gz
share/man/man1/exparna_p.1.gz
share/man/man1/exploc_p.1.gz
share/man/man1/gen-reliab-dot.pl.1.gz
share/man/man1/locarna-mea.pl.1.gz
share/man/man1/locarna-motif-scan.1.gz
share/man/man1/locarna.1.gz
share/man/man1/locarna_deviation.1.gz
share/man/man1/locarna_mcc.1.gz
share/man/man1/locarna_p.1.gz
share/man/man1/locarna_rnafold_pp.1.gz
share/man/man1/locarnap-predict-and-plot.pl.1.gz
share/man/man1/locarnap-realign-all.pl.1.gz
share/man/man1/locarnap-revcomp.pl.1.gz
share/man/man1/locarnap-revisit-RNAz-hits.pl.1.gz
share/man/man1/locarnap_fit.1.gz
share/man/man1/locarnate.1.gz
share/man/man1/mlocarna.1.gz
share/man/man1/mlocarna_nnames.1.gz
share/man/man1/plot-bmprobs.1.gz
share/man/man1/pp2dot.1.gz
share/man/man1/reliability-profile.pl.1.gz
share/man/man1/ribosum2cc.1.gz
share/man/man1/sparse.1.gz
%%DATADIR%%/Matrices/RIBOSUM85_60

1
biology/minimap2/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= minimap2
DISTVERSIONPREFIX= v
DISTVERSION= 2.25
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

6
biology/minimap2/files/patch-Makefile.simde
View File

@ -1,4 +1,4 @@
--- Makefile.simde.orig 2021-11-18 22:11:48 UTC
--- Makefile.simde.orig 2023-04-25 16:44:52 UTC
+++ Makefile.simde
@@ -1,13 +1,26 @@
-CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra
@ -21,7 +21,7 @@
LIBS= -lm -lz -lpthread
+PREFIX?= /usr/local
+MAN1DIR?= ${PREFIX}/man/man1
+MAN1DIR?= ${PREFIX}/share/man/man1
+DATADIR?= ${PREFIX}/share/minimap2
+MKDIR?= mkdir
@ -32,7 +32,7 @@
ifneq ($(arm_neon),) # if arm_neon is defined
ifeq ($(aarch64),) #if aarch64 is not defined
CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
@@ -26,7 +39,7 @@ ifneq ($(tsan),)
@@ -26,7 +39,7 @@ endif
LIBS+=-fsanitize=thread
endif

2
biology/minimap2/pkg-plist
View File

@ -1,7 +1,7 @@
bin/minimap2
bin/minimap2-lite
bin/sdust
man/man1/minimap2.1.gz
share/man/man1/minimap2.1.gz
%%DATADIR%%/test/MT-human.fa
%%DATADIR%%/test/MT-orang.fa
%%DATADIR%%/test/q-inv.fa

5
biology/peak-classifier/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= peak-classifier
DISTVERSION= 0.1.4-13
DISTVERSIONSUFFIX= -gfb89af3
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -16,10 +17,12 @@ RUN_DEPENDS= bedtools:biology/bedtools \
USES= localbase python:3.7+ shebangfix
USE_GITHUB= yes
GH_ACCOUNT= auerlab
SHEBANG_FILES= feature-view.py
MAKE_ARGS= MANPREFIX=${PREFIX}/share
pre-build:
cd ${WRKSRC} && make depend LOCALBASE=${LOCALBASE}

8
biology/peak-classifier/pkg-plist
View File

@ -3,7 +3,7 @@ bin/feature-view
bin/filter-overlaps
bin/peak-classifier
libexec/extract-genes.awk
man/man1/extract-genes.1.gz
man/man1/feature-view.1.gz
man/man1/filter-overlaps.1.gz
man/man1/peak-classifier.1.gz
share/man/man1/extract-genes.1.gz
share/man/man1/feature-view.1.gz
share/man/man1/filter-overlaps.1.gz
share/man/man1/peak-classifier.1.gz

2
biology/samtools/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= samtools
DISTVERSION= 1.17
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -18,6 +19,7 @@ USE_GITHUB= yes
USE_PERL5= test
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl
TEST_TARGET= test

84
biology/samtools/pkg-plist
View File

@ -20,45 +20,45 @@ bin/soap2sam.pl
bin/wgsim
bin/wgsim_eval.pl
bin/zoom2sam.pl
man/man1/samtools-addreplacerg.1.gz
man/man1/samtools-ampliconclip.1.gz
man/man1/samtools-ampliconstats.1.gz
man/man1/samtools-bedcov.1.gz
man/man1/samtools-calmd.1.gz
man/man1/samtools-cat.1.gz
man/man1/samtools-collate.1.gz
man/man1/samtools-consensus.1.gz
man/man1/samtools-coverage.1.gz
man/man1/samtools-cram-size.1.gz
man/man1/samtools-depad.1.gz
man/man1/samtools-depth.1.gz
man/man1/samtools-dict.1.gz
man/man1/samtools-faidx.1.gz
man/man1/samtools-fasta.1.gz
man/man1/samtools-fastq.1.gz
man/man1/samtools-fixmate.1.gz
man/man1/samtools-flags.1.gz
man/man1/samtools-flagstat.1.gz
man/man1/samtools-fqidx.1.gz
man/man1/samtools-head.1.gz
man/man1/samtools-idxstats.1.gz
man/man1/samtools-import.1.gz
man/man1/samtools-index.1.gz
man/man1/samtools-markdup.1.gz
man/man1/samtools-merge.1.gz
man/man1/samtools-mpileup.1.gz
man/man1/samtools-phase.1.gz
man/man1/samtools-quickcheck.1.gz
man/man1/samtools-reference.1.gz
man/man1/samtools-reheader.1.gz
man/man1/samtools-reset.1.gz
man/man1/samtools-rmdup.1.gz
man/man1/samtools-samples.1.gz
man/man1/samtools-sort.1.gz
man/man1/samtools-split.1.gz
man/man1/samtools-stats.1.gz
man/man1/samtools-targetcut.1.gz
man/man1/samtools-tview.1.gz
man/man1/samtools-view.1.gz
man/man1/samtools.1.gz
man/man1/wgsim.1.gz
share/man/man1/samtools-addreplacerg.1.gz
share/man/man1/samtools-ampliconclip.1.gz
share/man/man1/samtools-ampliconstats.1.gz
share/man/man1/samtools-bedcov.1.gz
share/man/man1/samtools-calmd.1.gz
share/man/man1/samtools-cat.1.gz
share/man/man1/samtools-collate.1.gz
share/man/man1/samtools-consensus.1.gz
share/man/man1/samtools-coverage.1.gz
share/man/man1/samtools-cram-size.1.gz
share/man/man1/samtools-depad.1.gz
share/man/man1/samtools-depth.1.gz
share/man/man1/samtools-dict.1.gz
share/man/man1/samtools-faidx.1.gz
share/man/man1/samtools-fasta.1.gz
share/man/man1/samtools-fastq.1.gz
share/man/man1/samtools-fixmate.1.gz
share/man/man1/samtools-flags.1.gz
share/man/man1/samtools-flagstat.1.gz
share/man/man1/samtools-fqidx.1.gz
share/man/man1/samtools-head.1.gz
share/man/man1/samtools-idxstats.1.gz
share/man/man1/samtools-import.1.gz
share/man/man1/samtools-index.1.gz
share/man/man1/samtools-markdup.1.gz
share/man/man1/samtools-merge.1.gz
share/man/man1/samtools-mpileup.1.gz
share/man/man1/samtools-phase.1.gz
share/man/man1/samtools-quickcheck.1.gz
share/man/man1/samtools-reference.1.gz
share/man/man1/samtools-reheader.1.gz
share/man/man1/samtools-reset.1.gz
share/man/man1/samtools-rmdup.1.gz
share/man/man1/samtools-samples.1.gz
share/man/man1/samtools-sort.1.gz
share/man/man1/samtools-split.1.gz
share/man/man1/samtools-stats.1.gz
share/man/man1/samtools-targetcut.1.gz
share/man/man1/samtools-tview.1.gz
share/man/man1/samtools-view.1.gz
share/man/man1/samtools.1.gz
share/man/man1/wgsim.1.gz

4
biology/scrm/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= scrm
DISTVERSIONPREFIX= v
DISTVERSION= 1.7.4
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
@ -14,8 +15,9 @@ USES= autoreconf compiler:c++11-lang gmake
USE_GITHUB= yes
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
PLIST_FILES= bin/scrm \
man/man1/scrm.1.gz
share/man/man1/scrm.1.gz
.include <bsd.port.mk>

5
biology/treekin/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= treekin
DISTVERSION= 0.5.1
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/packages/source/
DISTNAME= Treekin-${DISTVERSION}
@ -20,10 +20,11 @@ USES= blaslapack:netlib compiler:c++11-lang fortran gmake \
localbase:ldflags
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
BINARY_ALIAS= make=${GMAKE}
PLIST_FILES= bin/${PORTNAME} \
man/man1/${PORTNAME}.1.gz
share/man/man1/${PORTNAME}.1.gz
.include <bsd.port.mk>

5
biology/vcf-split/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= vcf-split
DISTVERSION= 0.1.5-10
DISTVERSIONSUFFIX= -g0f2fd0a
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -15,8 +16,8 @@ LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend
USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ENV= VERSION=${PORTVERSION}
PLIST_FILES= bin/vcf-split man/man1/vcf-split.1.gz
MAKE_ENV= VERSION=${PORTVERSION} MANPREFIX=${PREFIX}/share
PLIST_FILES= bin/vcf-split share/man/man1/vcf-split.1.gz
pre-build:
(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)

5
biology/vcf2hap/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= vcf2hap
DISTVERSION= 0.1.6-7
DISTVERSIONSUFFIX= -gfda1765
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -15,8 +16,8 @@ LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend
USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ENV= VERSION=${PORTVERSION}
PLIST_FILES= bin/vcf2hap man/man1/vcf2hap.1.gz
MAKE_ENV= VERSION=${PORTVERSION} MANPREFIX=${PREFIX}/share
PLIST_FILES= bin/vcf2hap share/man/man1/vcf2hap.1.gz
pre-build:
(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)

1
biology/vcflib/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= vcflib
DISTVERSIONPREFIX= v
DISTVERSION= 1.0.7
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

12
biology/vcflib/files/patch-CMakeLists.txt
View File

@ -1,6 +1,6 @@
--- CMakeLists.txt.orig 2023-01-29 04:57:02 UTC
--- CMakeLists.txt.orig 2023-02-07 17:22:46 UTC
+++ CMakeLists.txt
@@ -9,7 +9,7 @@
@@ -9,7 +9,7 @@ project(vcflib)
cmake_minimum_required(VERSION 3.16)
project(vcflib)
@ -9,7 +9,7 @@
include(ExternalProject)
include(FeatureSummary)
@@ -69,7 +69,7 @@ if(NOT CMAKE_BUILD_TYPE)
@@ -69,7 +69,7 @@ if (${CMAKE_BUILD_TYPE} MATCHES Release)
endif()
if (${CMAKE_BUILD_TYPE} MATCHES Release)
@ -18,3 +18,9 @@
# set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") # reset CXX_FLAGS to replace -O3 with -Ofast
endif()
@@ -570,4 +570,4 @@ install(FILES ${INCLUDES} DESTINATION include)
install(FILES ${INCLUDES} DESTINATION include)
-install(DIRECTORY ${CMAKE_SOURCE_DIR}/man/ DESTINATION ${CMAKE_INSTALL_PREFIX}/man/man1)
+install(DIRECTORY ${CMAKE_SOURCE_DIR}/man/ DESTINATION ${CMAKE_INSTALL_PREFIX}/share/man/man1)

178
biology/vcflib/pkg-plist
View File

@ -159,92 +159,92 @@ include/veclib_types.h
lib/libvcflib.a
%%ZIG%%lib/libzig.a
lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so
man/man1/abba-baba.1.gz
man/man1/bFst.1.gz
man/man1/dumpContigsFromHeader.1.gz
man/man1/genotypeSummary.1.gz
man/man1/hapLrt.1.gz
man/man1/iHS.1.gz
man/man1/meltEHH.1.gz
man/man1/normalize-iHS.1.gz
man/man1/pFst.1.gz
man/man1/pVst.1.gz
man/man1/permuteGPAT++.1.gz
man/man1/permuteSmooth.1.gz
man/man1/plotHaps.1.gz
man/man1/popStats.1.gz
man/man1/pyvcflib.1.gz
man/man1/segmentFst.1.gz
man/man1/segmentIhs.1.gz
man/man1/sequenceDiversity.1.gz
man/man1/smoother.1.gz
man/man1/vcf2dag.1.gz
man/man1/vcf2fasta.1.gz
man/man1/vcf2tsv.1.gz
man/man1/vcfaddinfo.1.gz
man/man1/vcfafpath.1.gz
man/man1/vcfallelicprimitives.1.gz
man/man1/vcfaltcount.1.gz
man/man1/vcfannotate.1.gz
man/man1/vcfannotategenotypes.1.gz
man/man1/vcfbreakmulti.1.gz
man/man1/vcfcat.1.gz
man/man1/vcfcheck.1.gz
man/man1/vcfclassify.1.gz
man/man1/vcfcleancomplex.1.gz
man/man1/vcfcombine.1.gz
man/man1/vcfcommonsamples.1.gz
man/man1/vcfcountalleles.1.gz
man/man1/vcfcreatemulti.1.gz
man/man1/vcfdistance.1.gz
man/man1/vcfecho.1.gz
man/man1/vcfentropy.1.gz
man/man1/vcfevenregions.1.gz
man/man1/vcffilter.1.gz
man/man1/vcffixup.1.gz
man/man1/vcfflatten.1.gz
man/man1/vcfgeno2alleles.1.gz
man/man1/vcfgeno2haplo.1.gz
man/man1/vcfgenosamplenames.1.gz
man/man1/vcfgenosummarize.1.gz
man/man1/vcfgenotypecompare.1.gz
man/man1/vcfgenotypes.1.gz
man/man1/vcfglbound.1.gz
man/man1/vcfglxgt.1.gz
man/man1/vcfhetcount.1.gz
man/man1/vcfhethomratio.1.gz
man/man1/vcfindex.1.gz
man/man1/vcfinfo2qual.1.gz
man/man1/vcfinfosummarize.1.gz
man/man1/vcfintersect.1.gz
man/man1/vcfkeepgeno.1.gz
man/man1/vcfkeepinfo.1.gz
man/man1/vcfkeepsamples.1.gz
man/man1/vcfld.1.gz
man/man1/vcfleftalign.1.gz
man/man1/vcflength.1.gz
man/man1/vcflib-api.1.gz
man/man1/vcflib.1.gz
man/man1/vcfnulldotslashdot.1.gz
man/man1/vcfnullgenofields.1.gz
man/man1/vcfnumalt.1.gz
man/man1/vcfoverlay.1.gz
man/man1/vcfparsealts.1.gz
man/man1/vcfprimers.1.gz
man/man1/vcfqual2info.1.gz
man/man1/vcfrandom.1.gz
man/man1/vcfrandomsample.1.gz
man/man1/vcfremap.1.gz
man/man1/vcfremoveaberrantgenotypes.1.gz
man/man1/vcfremovesamples.1.gz
man/man1/vcfroc.1.gz
man/man1/vcfsample2info.1.gz
man/man1/vcfsamplediff.1.gz
man/man1/vcfsamplenames.1.gz
man/man1/vcfsitesummarize.1.gz
man/man1/vcfstats.1.gz
man/man1/vcfstreamsort.1.gz
man/man1/vcfuniq.1.gz
man/man1/vcfuniqalleles.1.gz
man/man1/vcfwave.1.gz
man/man1/wcFst.1.gz
share/man/man1/abba-baba.1.gz
share/man/man1/bFst.1.gz
share/man/man1/dumpContigsFromHeader.1.gz
share/man/man1/genotypeSummary.1.gz
share/man/man1/hapLrt.1.gz
share/man/man1/iHS.1.gz
share/man/man1/meltEHH.1.gz
share/man/man1/normalize-iHS.1.gz
share/man/man1/pFst.1.gz
share/man/man1/pVst.1.gz
share/man/man1/permuteGPAT++.1.gz
share/man/man1/permuteSmooth.1.gz
share/man/man1/plotHaps.1.gz
share/man/man1/popStats.1.gz
share/man/man1/pyvcflib.1.gz
share/man/man1/segmentFst.1.gz
share/man/man1/segmentIhs.1.gz
share/man/man1/sequenceDiversity.1.gz
share/man/man1/smoother.1.gz
share/man/man1/vcf2dag.1.gz
share/man/man1/vcf2fasta.1.gz
share/man/man1/vcf2tsv.1.gz
share/man/man1/vcfaddinfo.1.gz
share/man/man1/vcfafpath.1.gz
share/man/man1/vcfallelicprimitives.1.gz
share/man/man1/vcfaltcount.1.gz
share/man/man1/vcfannotate.1.gz
share/man/man1/vcfannotategenotypes.1.gz
share/man/man1/vcfbreakmulti.1.gz
share/man/man1/vcfcat.1.gz
share/man/man1/vcfcheck.1.gz
share/man/man1/vcfclassify.1.gz
share/man/man1/vcfcleancomplex.1.gz
share/man/man1/vcfcombine.1.gz
share/man/man1/vcfcommonsamples.1.gz
share/man/man1/vcfcountalleles.1.gz
share/man/man1/vcfcreatemulti.1.gz
share/man/man1/vcfdistance.1.gz
share/man/man1/vcfecho.1.gz
share/man/man1/vcfentropy.1.gz
share/man/man1/vcfevenregions.1.gz
share/man/man1/vcffilter.1.gz
share/man/man1/vcffixup.1.gz
share/man/man1/vcfflatten.1.gz
share/man/man1/vcfgeno2alleles.1.gz
share/man/man1/vcfgeno2haplo.1.gz
share/man/man1/vcfgenosamplenames.1.gz
share/man/man1/vcfgenosummarize.1.gz
share/man/man1/vcfgenotypecompare.1.gz
share/man/man1/vcfgenotypes.1.gz
share/man/man1/vcfglbound.1.gz
share/man/man1/vcfglxgt.1.gz
share/man/man1/vcfhetcount.1.gz
share/man/man1/vcfhethomratio.1.gz
share/man/man1/vcfindex.1.gz
share/man/man1/vcfinfo2qual.1.gz
share/man/man1/vcfinfosummarize.1.gz
share/man/man1/vcfintersect.1.gz
share/man/man1/vcfkeepgeno.1.gz
share/man/man1/vcfkeepinfo.1.gz
share/man/man1/vcfkeepsamples.1.gz
share/man/man1/vcfld.1.gz
share/man/man1/vcfleftalign.1.gz
share/man/man1/vcflength.1.gz
share/man/man1/vcflib-api.1.gz
share/man/man1/vcflib.1.gz
share/man/man1/vcfnulldotslashdot.1.gz
share/man/man1/vcfnullgenofields.1.gz
share/man/man1/vcfnumalt.1.gz
share/man/man1/vcfoverlay.1.gz
share/man/man1/vcfparsealts.1.gz
share/man/man1/vcfprimers.1.gz
share/man/man1/vcfqual2info.1.gz
share/man/man1/vcfrandom.1.gz
share/man/man1/vcfrandomsample.1.gz
share/man/man1/vcfremap.1.gz
share/man/man1/vcfremoveaberrantgenotypes.1.gz
share/man/man1/vcfremovesamples.1.gz
share/man/man1/vcfroc.1.gz
share/man/man1/vcfsample2info.1.gz
share/man/man1/vcfsamplediff.1.gz
share/man/man1/vcfsamplenames.1.gz
share/man/man1/vcfsitesummarize.1.gz
share/man/man1/vcfstats.1.gz
share/man/man1/vcfstreamsort.1.gz
share/man/man1/vcfuniq.1.gz
share/man/man1/vcfuniqalleles.1.gz
share/man/man1/vcfwave.1.gz
share/man/man1/wcFst.1.gz

3
biology/vcftools/Makefile
View File

@ -1,7 +1,7 @@
PORTNAME= vcftools
PORTVERSION= 0.1.16
DISTVERSIONPREFIX= v
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -13,6 +13,7 @@ LICENSE= LGPL3
USES= autoreconf cpe gmake perl5 pkgconfig
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
USE_GITHUB= yes
CXXFLAGS+= -std=c++14

2
biology/vcftools/pkg-plist
View File

@ -26,4 +26,4 @@ bin/vcftools
%%SITE_PERL%%/FaSlice.pm
%%SITE_PERL%%/Vcf.pm
%%SITE_PERL%%/VcfStats.pm
man/man1/vcftools.1.gz
share/man/man1/vcftools.1.gz

3
biology/viennarna/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= viennarna
DISTVERSION= 2.6.4
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/
DISTNAME= ViennaRNA-${DISTVERSION}
@ -31,6 +31,7 @@ USES= autoreconf bison compiler:c++17-lang fortran gmake \
USE_XORG= ice x11 xext # only for build
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
CONFIGURE_SHELL= ${PREFIX}/bin/bash
CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl

66
biology/viennarna/pkg-plist
View File

@ -188,39 +188,39 @@ include/g2_gd.h
lib/libRNA.a
lib/libg2.a
libdata/pkgconfig/RNAlib2.pc
man/man1/AnalyseDists.1.gz
man/man1/AnalyseSeqs.1.gz
man/man1/Kinfold.1.gz
man/man1/RNA2Dfold.1.gz
man/man1/RNALalifold.1.gz
man/man1/RNALfold.1.gz
man/man1/RNAPKplex.1.gz
man/man1/RNAaliduplex.1.gz
man/man1/RNAalifold.1.gz
man/man1/RNAcofold.1.gz
man/man1/RNAdistance.1.gz
man/man1/RNAdos.1.gz
man/man1/RNAduplex.1.gz
man/man1/RNAeval.1.gz
man/man1/RNAfold.1.gz
man/man1/RNAforester.1.gz
man/man1/RNAheat.1.gz
man/man1/RNAinverse.1.gz
man/man1/RNAlocmin.1.gz
man/man1/RNAmultifold.1.gz
man/man1/RNApaln.1.gz
man/man1/RNAparconv.1.gz
man/man1/RNApdist.1.gz
man/man1/RNAplex.1.gz
man/man1/RNAplfold.1.gz
man/man1/RNAplot.1.gz
man/man1/RNApvmin.1.gz
man/man1/RNAsnoop.1.gz
man/man1/RNAsubopt.1.gz
man/man1/RNAup.1.gz
man/man1/RNAxplorer.1.gz
man/man1/ct2db.1.gz
man/man1/kinwalker.1.gz
share/man/man1/AnalyseDists.1.gz
share/man/man1/AnalyseSeqs.1.gz
share/man/man1/Kinfold.1.gz
share/man/man1/RNA2Dfold.1.gz
share/man/man1/RNALalifold.1.gz
share/man/man1/RNALfold.1.gz
share/man/man1/RNAPKplex.1.gz
share/man/man1/RNAaliduplex.1.gz
share/man/man1/RNAalifold.1.gz
share/man/man1/RNAcofold.1.gz
share/man/man1/RNAdistance.1.gz
share/man/man1/RNAdos.1.gz
share/man/man1/RNAduplex.1.gz
share/man/man1/RNAeval.1.gz
share/man/man1/RNAfold.1.gz
share/man/man1/RNAforester.1.gz
share/man/man1/RNAheat.1.gz
share/man/man1/RNAinverse.1.gz
share/man/man1/RNAlocmin.1.gz
share/man/man1/RNAmultifold.1.gz
share/man/man1/RNApaln.1.gz
share/man/man1/RNAparconv.1.gz
share/man/man1/RNApdist.1.gz
share/man/man1/RNAplex.1.gz
share/man/man1/RNAplfold.1.gz
share/man/man1/RNAplot.1.gz
share/man/man1/RNApvmin.1.gz
share/man/man1/RNAsnoop.1.gz
share/man/man1/RNAsubopt.1.gz
share/man/man1/RNAup.1.gz
share/man/man1/RNAxplorer.1.gz
share/man/man1/ct2db.1.gz
share/man/man1/kinwalker.1.gz
share/ViennaRNA/2Dlandscape.R
share/ViennaRNA/2Dlandscape_mfe.gri
share/ViennaRNA/2Dlandscape_pf.gri

4
biology/vsearch/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= vsearch
DISTVERSIONPREFIX= v
DISTVERSION= 2.27.0
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -18,8 +19,9 @@ USE_GITHUB= yes
GH_ACCOUNT= torognes
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
PLIST_FILES= bin/vsearch man/man1/vsearch.1.gz
PLIST_FILES= bin/vsearch share/man/man1/vsearch.1.gz
PORTDOCS= *
OPTIONS_DEFINE= DOCS

2
cad/PrusaSlicer/Makefile
View File

@ -12,6 +12,8 @@ WWW= https://www.prusa3d.com/prusaslicer/
LICENSE= AGPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN= fails to build, error: no member named 'prior' in namespace 'boost'
BUILD_DEPENDS= cereal>=1.3.0.10:devel/cereal \
cgal>=5.0.2:math/cgal \
opencascade>=7.7.0:cad/opencascade

3
cad/geda/Makefile
View File

@ -1,7 +1,7 @@
PORTNAME= geda
PORTVERSION= 1.8.2
DISTVERSIONPREFIX=gaf-
PORTREVISION= 8
PORTREVISION= 9
PORTEPOCH= 1
CATEGORIES= cad
MASTER_SITES= http://ftp.geda-project.org/${PORTNAME}-gaf/stable/v${PORTVERSION:R}/${PORTVERSION}/
@ -27,6 +27,7 @@ USE_GNOME= gtk20
USE_PERL5= run
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --with-libstroke=${LOCALBASE}
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
INSTALL_TARGET= install-strip
USE_LDCONFIG= yes
DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}-gaf

44
cad/geda/pkg-plist
View File

@ -36,28 +36,28 @@ lib/libgeda.so
lib/libgeda.so.42
lib/libgeda.so.42.0.1
libdata/pkgconfig/libgeda.pc
man/man1/convert_sym.1.gz
man/man1/garchive.1.gz
man/man1/gattrib.1.gz
man/man1/gmk_sym.1.gz
man/man1/gnetlist.1.gz
man/man1/grenum.1.gz
man/man1/gsch2pcb.1.gz
man/man1/gschem.1.gz
man/man1/gschlas.1.gz
man/man1/gsymcheck.1.gz
man/man1/gsymfix.1.gz
man/man1/gxyrs.1.gz
man/man1/olib.1.gz
man/man1/pads_backannotate.1.gz
man/man1/pcb_backannotate.1.gz
man/man1/refdes_renum.1.gz
man/man1/sarlacc_schem.1.gz
man/man1/sarlacc_sym.1.gz
man/man1/schdiff.1.gz
man/man1/smash_megafile.1.gz
man/man1/sw2asc.1.gz
man/man1/tragesym.1.gz
share/man/man1/convert_sym.1.gz
share/man/man1/garchive.1.gz
share/man/man1/gattrib.1.gz
share/man/man1/gmk_sym.1.gz
share/man/man1/gnetlist.1.gz
share/man/man1/grenum.1.gz
share/man/man1/gsch2pcb.1.gz
share/man/man1/gschem.1.gz
share/man/man1/gschlas.1.gz
share/man/man1/gsymcheck.1.gz
share/man/man1/gsymfix.1.gz
share/man/man1/gxyrs.1.gz
share/man/man1/olib.1.gz
share/man/man1/pads_backannotate.1.gz
share/man/man1/pcb_backannotate.1.gz
share/man/man1/refdes_renum.1.gz
share/man/man1/sarlacc_schem.1.gz
share/man/man1/sarlacc_sym.1.gz
share/man/man1/schdiff.1.gz
share/man/man1/smash_megafile.1.gz
share/man/man1/sw2asc.1.gz
share/man/man1/tragesym.1.gz
share/applications/geda-gattrib.desktop
share/applications/geda-gschem.desktop
%%PORTDOCS%%%%DOCSDIR%%/examples/README

2
cad/iverilog/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= iverilog
DISTVERSIONPREFIX= v
DISTVERSION= 12_0
PORTREVISION= 1
CATEGORIES= cad
MAINTAINER= kbowling@FreeBSD.org
@ -19,6 +20,7 @@ GH_ACCOUNT= steveicarus
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --disable-suffix
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
pre-configure:
@cd ${WRKSRC} && sh autoconf.sh

6
cad/iverilog/pkg-plist
View File

@ -46,6 +46,6 @@ lib/ivl/vvp.conf
lib/ivl/vvp.tgt
lib/libveriuser.a
lib/libvpi.a
man/man1/iverilog.1.gz
man/man1/iverilog-vpi.1.gz
man/man1/vvp.1.gz
share/man/man1/iverilog.1.gz
share/man/man1/iverilog-vpi.1.gz
share/man/man1/vvp.1.gz

3
cad/leocad/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= leocad
DISTVERSIONPREFIX= v
DISTVERSION= 23.03
PORTREVISION= 1
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
@ -18,7 +19,7 @@ GH_ACCOUNT= leozide
USE_QT= core gui concurrent network opengl printsupport widgets xml buildtools:build linguisttools:build
USE_GL= gl
QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} MAN_DIR=${PREFIX}/man/man1 LDRAW_LIBRARY_PATH=${PREFIX}/share/ldraw
QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} MAN_DIR=${PREFIX}/share/man/man1 LDRAW_LIBRARY_PATH=${PREFIX}/share/ldraw
PORTSCOUT= limit:^[0-9\.]*$$ # to ignore the 'continuous' tag

2
cad/leocad/pkg-plist
View File

@ -1,5 +1,5 @@
bin/leocad
man/man1/leocad.1.gz
share/man/man1/leocad.1.gz
share/applications/leocad.desktop
share/icons/hicolor/128x128/apps/leocad.png
share/icons/hicolor/128x128/mimetypes/application-vnd.leocad.png

6
cad/ngspice_rework/Makefile
View File

@ -1,5 +1,6 @@
PORTNAME= ngspice_rework
PORTVERSION= 41
PORTREVISION= 1
CATEGORIES= cad
MASTER_SITES= SF/ngspice/ng-spice-rework/${PORTVERSION}
DISTNAME= ngspice-${PORTVERSION}
@ -22,6 +23,7 @@ USES= compiler:c11 gmake libtool ncurses readline autoreconf pkgconfig
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-cider --enable-xspice --with-readline=yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
OPTIONS_DEFINE= DEBUG
@ -32,10 +34,10 @@ CONFIGURE_ARGS+= --with-ngshared --enable-shared
USES+= xorg
USE_XORG= ice sm x11 xaw xext xmu xt xft
CONFIGURE_ARGS+= --with-x
PLIST_FILES= bin/ngspice man/man1/ngspice.1.gz
PLIST_FILES= bin/ngspice share/man/man1/ngspice.1.gz
post-install:
@cd ${STAGEDIR}${PREFIX} && \
${RM} -r include lib share && \
${RM} -r include lib share/ngspice && \
${RM} bin/cmpp man/man1/cmpp.1
.endif

2
cad/nvc/Makefile
View File

@ -1,6 +1,7 @@
PORTNAME= nvc
DISTVERSIONPREFIX= r
DISTVERSION= 1.11.3
PORTREVISION= 1
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
@ -30,6 +31,7 @@ GH_ACCOUNT= nickg
SHEBANG_FILES= contrib/functions.sh
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
LDFLAGS+= -lexecinfo

2
cad/nvc/pkg-plist
View File

@ -165,5 +165,5 @@ libexec/nvc/install-uvvm.sh
libexec/nvc/install-vivado.sh
libexec/nvc/install-vunit.sh
libexec/nvc/install-xpm_vhdl.sh
man/man1/nvc.1.gz
share/man/man1/nvc.1.gz
share/bash-completion/completions/nvc.bash

17
cad/openctm/Makefile
View File

@ -1,6 +1,6 @@
PORTNAME= openctm
DISTVERSION= 1.0.3
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= cad
MASTER_SITES= https://sourceforge.net/projects/openctm/files/
DISTNAME= OpenCTM-${DISTVERSION}-src
@ -12,17 +12,18 @@ WWW= https://sourceforge.net/projects/openctm/
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
LIB_DEPENDS= libtinyxml.so:textproc/tinyxml \
libpnglite.so:graphics/pnglite \
LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
libfreetype.so:print/freetype2 \
libfontconfig.so:x11-fonts/fontconfig
libharfbuzz.so:print/harfbuzz \
libpnglite.so:graphics/pnglite \
libtinyxml.so:textproc/tinyxml
BUILD_DEPENDS= pnglite>0:graphics/pnglite \
tinyxml>0:textproc/tinyxml
USES= compiler:c++11-lang dos2unix gettext-runtime gl gmake \
gnome jpeg pkgconfig tar:bz2
USE_GL= gl glu glew glut
USE_GNOME= gtk20 pango atk cairo gdkpixbuf2 glib20
USES= compiler:c++11-lang dos2unix gettext-runtime gl gmake gnome \
jpeg pkgconfig tar:bz2
USE_GL= gl glew glu glut
USE_GNOME= atk cairo gdkpixbuf2 glib20 gtk20 pango
MAKEFILE= Makefile.linux
USE_LDCONFIG= yes

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