parent
2ff88bda95
commit
6b0fddc208
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@ -0,0 +1,69 @@
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Upstream patch for https://gitlab.gnome.org/GNOME/pyatspi2/issues/1
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diff --git pyatspi/registry.py pyatspi/registry.py
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index cb28395..f73ee16 100644
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--- pyatspi/registry.py
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+++ pyatspi/registry.py
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@@ -50,9 +50,9 @@ class Registry(object):
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reference to the Accessibility.Registry singleton. Doing so is harmless and
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has no point.
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- @@ivar async: Should event dispatch to local listeners be decoupled from event
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- receiving from the registry?
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- @@type async: boolean
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+ @@ivar asynchronous: Should event dispatch to local listeners be decoupled
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+ from event receiving from the registry?
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+ @@type asynchronous: boolean
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@@ivar reg: Reference to the real, wrapped registry object
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@@type reg: Accessibility.Registry
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@@ivar dev: Reference to the device controller
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@@ -111,25 +111,44 @@ def _set_registry (self, main_loop_type, app_name=None):
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self.has_implementations = True
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- self.async = False # not fully supported yet
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+ self.asynchronous = False # not fully supported yet
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self.started = False
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self.event_listeners = dict()
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+ def __getattr__(self, name):
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+ """
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+ For backwards compatibility with old API
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+ """
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+ if name == 'async':
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+ return self.asynchronous
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+ return object.__getattr__(self, name)
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+
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+ def __setattr__(self, name, value):
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+ """
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+ For backwards compatibility with old API
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+ """
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+ if name == 'async':
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+ self.asynchronous = value
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+ object.__setattr__(self, name, value)
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+
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def _set_default_registry (self):
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self._set_registry (MAIN_LOOP_GLIB)
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- def start(self, async=False, gil=True):
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+ def start(self, asynchronous=False, gil=True, **kwargs):
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"""
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Enter the main loop to start receiving and dispatching events.
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- @@param async: Should event dispatch be asynchronous (decoupled) from
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- event receiving from the AT-SPI registry?
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- @@type async: boolean
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+ @@param asynchronous: Should event dispatch be asynchronous
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+ (decoupled) from event receiving from the AT-SPI registry?
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+ @@type asynchronous: boolean
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@@param gil: Add an idle callback which releases the Python GIL for a few
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milliseconds to allow other threads to run? Necessary if other threads
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will be used in this process.
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@@type gil: boolean
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"""
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+ if 'async' in kwargs:
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+ # support previous API
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+ asynchronous = kwargs['async']
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if not self.has_implementations:
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self._set_default_registry ()
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self.started = True
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@ -7,7 +7,7 @@ CATEGORIES= archivers
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MASTER_SITES= SF/sevenzip/LZMA%20SDK/
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DISTNAME= lzma${PORTVERSION:S/.//g}
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MAINTAINER= ndowens.fbsd@yandex.com
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MAINTAINER= ndowens@yahoo.com
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COMMENT= High-ratio LZMA compressor
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CONFLICTS= lzmautils-[0-9]* xz-[0-9]*
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@ -14,10 +14,10 @@ COMMENT= Wrapper around Archive::Rar
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Archive-Any>=0:archivers/p5-Archive-Any \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Archive-Any>=0:archivers/p5-Archive-Any \
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p5-Archive-Rar>=0:archivers/p5-Archive-Rar \
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p5-lib-abs>=0.90:devel/p5-lib-abs
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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USES= perl5
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USE_PERL5= configure
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@ -14,11 +14,11 @@ LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= p5-Archive-Zip>=1.07:archivers/p5-Archive-Zip \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Archive-Zip>=1.07:archivers/p5-Archive-Zip \
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p5-File-MMagic>=1.27:devel/p5-File-MMagic \
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p5-MIME-Types>=1.16:mail/p5-MIME-Types \
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p5-Module-Find>=0.05:devel/p5-Module-Find
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Perl-Critic>=0:textproc/p5-Test-Perl-Critic \
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p5-Test-Warn>=0:devel/p5-Test-Warn
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@ -14,8 +14,8 @@ COMMENT= Generic archive extracting mechanism (using libarchive)
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Object-Tiny>=0:devel/p5-Object-Tiny
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Object-Tiny>=0:devel/p5-Object-Tiny
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TEST_DEPENDS= p5-File-Slurp>=0:devel/p5-File-Slurp \
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p5-Path-Class>=0:devel/p5-Path-Class \
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p5-Test-Pod>=1.04:devel/p5-Test-Pod
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@ -14,10 +14,10 @@ COMMENT= Peek into archives without extracting them
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
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p5-Moose>=0:devel/p5-Moose \
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p5-MooseX-Types-Path-Class>=0:devel/p5-MooseX-Types-Path-Class
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Pod>=1.14:devel/p5-Test-Pod
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USES= perl5
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@ -14,9 +14,9 @@ COMMENT= Interface with the 'rar' command
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-IPC-Run>=0:devel/p5-IPC-Run \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-IPC-Run>=0:devel/p5-IPC-Run \
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rar:archivers/rar
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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NO_ARCH= yes
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USES= perl5
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@ -14,9 +14,9 @@ COMMENT= Simple module for extract archives
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Archive-Rar>=2.02:archivers/p5-Archive-Rar \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Archive-Rar>=2.02:archivers/p5-Archive-Rar \
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p5-Archive-Zip>=1.30:archivers/p5-Archive-Zip
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Pod>=0:devel/p5-Test-Pod \
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p5-Test-Pod-Coverage>=0:devel/p5-Test-Pod-Coverage
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@ -13,10 +13,10 @@ COMMENT= API wrapper around the 'tar' utility
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LICENSE= GPLv3+
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= p5-File-Which>=0:sysutils/p5-File-Which \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-File-Which>=0:sysutils/p5-File-Which \
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p5-IPC-Run>=0:devel/p5-IPC-Run \
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p5-Log-Log4perl>=0:devel/p5-Log-Log4perl
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Dumbbench>=0.111:benchmarks/p5-Dumbbench
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NO_ARCH= yes
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@ -13,11 +13,11 @@ COMMENT= Pure perl implementation of LZW
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Moo>=1.001000:devel/p5-Moo \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Moo>=1.001000:devel/p5-Moo \
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p5-Type-Tiny>0:devel/p5-Type-Tiny \
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p5-namespace-clean>0:devel/p5-namespace-clean \
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p5-strictures>0:devel/p5-strictures
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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NO_ARCH= yes
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USES= perl5
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@ -13,9 +13,9 @@ COMMENT= Write lzf files / buffers
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Compress-LZF>=0:archivers/p5-Compress-LZF \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-LZF>=0:archivers/p5-Compress-LZF \
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p5-IO-Compress>=${PORTVERSION}:archivers/p5-IO-Compress
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Pod>=1:devel/p5-Test-Pod
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NO_ARCH= yes
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@ -13,9 +13,9 @@ COMMENT= Write lzma files / buffers
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Compress-Raw-Lzma>=${PORTVERSION}:archivers/p5-Compress-Raw-Lzma \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-Raw-Lzma>=${PORTVERSION}:archivers/p5-Compress-Raw-Lzma \
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p5-IO-Compress>=${PORTVERSION}:archivers/p5-IO-Compress
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-IO-String>=0:devel/p5-IO-String \
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p5-Test-Pod>=1:devel/p5-Test-Pod \
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p7zip>=0:archivers/p7zip
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@ -13,9 +13,9 @@ COMMENT= Write lzop files / buffers
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Compress-LZO>=0:archivers/p5-Compress-LZO \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-LZO>=0:archivers/p5-Compress-LZO \
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p5-IO-Compress>=${PORTVERSION}:archivers/p5-IO-Compress
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Pod>=1:devel/p5-Test-Pod
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NO_ARCH= yes
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|
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@ -13,9 +13,9 @@ COMMENT= Perl5 compression modules (bzip2, deflate, gzip, zlib, zip)
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LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Compress-Raw-Bzip2>=${PORTVERSION}:archivers/p5-Compress-Raw-Bzip2 \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-Raw-Bzip2>=${PORTVERSION}:archivers/p5-Compress-Raw-Bzip2 \
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p5-Compress-Raw-Zlib>=${PORTVERSION}:archivers/p5-Compress-Raw-Zlib
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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TEST_DEPENDS= p5-Test-Pod>=1:devel/p5-Test-Pod
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NO_ARCH= yes
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|
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@ -14,9 +14,9 @@ LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= p5-Compress-Bzip2>=2.08:archivers/p5-Compress-Bzip2 \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-Bzip2>=2.08:archivers/p5-Compress-Bzip2 \
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p5-POE>=0.38:devel/p5-POE
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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NO_ARCH= yes
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USES= perl5
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|
|
|
@ -14,9 +14,9 @@ LICENSE= ART10 GPLv1+
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LICENSE_COMB= dual
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||||
LICENSE_FILE= ${WRKSRC}/LICENSE
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||||
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BUILD_DEPENDS= p5-Compress-LZF>=1.51:archivers/p5-Compress-LZF \
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BUILD_DEPENDS= ${RUN_DEPENDS}
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RUN_DEPENDS= p5-Compress-LZF>=1.51:archivers/p5-Compress-LZF \
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p5-POE>=0.38:devel/p5-POE
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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USES= perl5
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USE_PERL5= configure
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||||
|
|
|
@ -14,9 +14,9 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-Compress-LZO>=1.08:archivers/p5-Compress-LZO \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Compress-LZO>=1.08:archivers/p5-Compress-LZO \
|
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p5-POE>=0.38:devel/p5-POE
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||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
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||||
|
|
|
@ -14,9 +14,9 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-Compress-LZW>=0:archivers/p5-Compress-LZW \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Compress-LZW>=0:archivers/p5-Compress-LZW \
|
||||
p5-POE>=0.38:devel/p5-POE
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,8 +14,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-POE>=0.38:devel/p5-POE
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-POE>=0.38:devel/p5-POE
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,8 +14,8 @@ COMMENT= Perl extension to provide a PerlIO layer to bzip2/bunzip2
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Compress-Bzip2>=0:archivers/p5-Compress-Bzip2
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Compress-Bzip2>=0:archivers/p5-Compress-Bzip2
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -3,7 +3,7 @@
|
|||
|
||||
PORTNAME= par2cmdline-tbb
|
||||
PORTVERSION= 20100203
|
||||
PORTREVISION= 15
|
||||
PORTREVISION= 16
|
||||
CATEGORIES= archivers
|
||||
MASTER_SITES= http://chuchusoft.com/par2_tbb/
|
||||
DISTNAME= par2cmdline-0.4-tbb-${PORTVERSION}
|
||||
|
|
|
@ -7,7 +7,7 @@ CATEGORIES= archivers python
|
|||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= feld@FreeBSD.org
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= Fast C-based zipfile decryption for Python
|
||||
|
||||
LICENSE= PSFL
|
||||
|
|
|
@ -2,7 +2,7 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= josm
|
||||
PORTVERSION= 14178
|
||||
PORTVERSION= 14289
|
||||
CATEGORIES= astro java
|
||||
MASTER_SITES= http://josm.openstreetmap.de/download/ \
|
||||
http://mirror.amdmi3.ru/distfiles/
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1535278956
|
||||
SHA256 (josm-snapshot-14178.jar) = 19d8b2cf7d8408bccdb4242974e4215e67fb6a67a76d6ba3dfa8b1b591265621
|
||||
SIZE (josm-snapshot-14178.jar) = 13221878
|
||||
TIMESTAMP = 1538749972
|
||||
SHA256 (josm-snapshot-14289.jar) = 4b6f570d8d42e7a20d0bcafe6bd47431e19b4648eb3271dc9f1aa74306bc4d80
|
||||
SIZE (josm-snapshot-14289.jar) = 13308372
|
||||
|
|
|
@ -1,8 +1,7 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= kstars
|
||||
DISTVERSION= 2.9.7
|
||||
PORTREVISION= 1
|
||||
DISTVERSION= 2.9.8
|
||||
PORTEPOCH= 1
|
||||
CATEGORIES= astro kde
|
||||
MASTER_SITES= KDE/stable/${PORTNAME}
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1533104584
|
||||
SHA256 (kstars-2.9.7.tar.xz) = 4d80f5b5b5f38500f259c0272ba7f85bb4d1e877060bb3a1a0469a32573d0f53
|
||||
SIZE (kstars-2.9.7.tar.xz) = 62657568
|
||||
TIMESTAMP = 1538265420
|
||||
SHA256 (kstars-2.9.8.tar.xz) = 95f36cae6cc84d5d745b13cf690b56ea8ba27012faef1f901191d89007232d7d
|
||||
SIZE (kstars-2.9.8.tar.xz) = 62674968
|
||||
|
|
|
@ -2,7 +2,7 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= mkgmap
|
||||
PORTVERSION= r4240
|
||||
PORTVERSION= r4244
|
||||
CATEGORIES= astro converters java
|
||||
MASTER_SITES= http://www.mkgmap.org.uk/download/ \
|
||||
http://mirror.amdmi3.ru/distfiles/
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1536078552
|
||||
SHA256 (mkgmap-r4240.tar.gz) = c8812de76103a7a10221b2ea71438c1488ccc4a7ba66f60479028214db9ffcab
|
||||
SIZE (mkgmap-r4240.tar.gz) = 3387357
|
||||
TIMESTAMP = 1538587308
|
||||
SHA256 (mkgmap-r4244.tar.gz) = 98b3e072c62bdca988e42a743174ab56302722173279054971b683c0ea7fc0ff
|
||||
SIZE (mkgmap-r4244.tar.gz) = 3386451
|
||||
|
|
|
@ -13,8 +13,8 @@ COMMENT= OO Perl interface to the ADS abstract service
|
|||
|
||||
LICENSE= GPLv2+
|
||||
|
||||
BUILD_DEPENDS= p5-libwww>=0:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-libwww>=0:www/p5-libwww
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -13,13 +13,13 @@ COMMENT= Forecast satellite visibility
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Astro-SIMBAD-Client>=0:astro/p5-Astro-SIMBAD-Client \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-SIMBAD-Client>=0:astro/p5-Astro-SIMBAD-Client \
|
||||
p5-Astro-satpass>=0.077:astro/p5-Astro-satpass \
|
||||
p5-Clone>=0:devel/p5-Clone \
|
||||
p5-File-HomeDir>=0.93:devel/p5-File-HomeDir \
|
||||
p5-IPC-System-Simple>=0:devel/p5-IPC-System-Simple \
|
||||
p5-Template-Toolkit>=2.21:www/p5-Template-Toolkit
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -13,7 +13,8 @@ COMMENT= Generic stellar catalogue object
|
|||
LICENSE= GPLv3
|
||||
|
||||
# p5-Astro-FITS-CFITSIO is a recommended dependency
|
||||
BUILD_DEPENDS= p5-Astro-Coords>=0.12:astro/p5-Astro-Coords \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-Coords>=0.12:astro/p5-Astro-Coords \
|
||||
p5-Astro-FITS-CFITSIO>=1.03:astro/p5-Astro-FITS-CFITSIO \
|
||||
p5-Astro-Flux>=0.01:astro/p5-Astro-Flux \
|
||||
p5-Astro-Telescope>=0.50:astro/p5-Astro-Telescope \
|
||||
|
@ -23,7 +24,6 @@ BUILD_DEPENDS= p5-Astro-Coords>=0.12:astro/p5-Astro-Coords \
|
|||
p5-Number-Uncertainty>=0.1:math/p5-Number-Uncertainty \
|
||||
p5-SOAP-Lite>=0:net/p5-SOAP-Lite \
|
||||
p5-libwww>=5.53:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= localbase perl5
|
||||
|
|
|
@ -12,10 +12,10 @@ COMMENT= Class for handling astronomical coordinates
|
|||
|
||||
LICENSE= GPLv2+
|
||||
|
||||
BUILD_DEPENDS= p5-Astro-PAL>=0:astro/p5-Astro-PAL \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-PAL>=0:astro/p5-Astro-PAL \
|
||||
p5-Astro-Telescope>=0.71:astro/p5-Astro-Telescope \
|
||||
p5-DateTime>=0.76:devel/p5-DateTime
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-Test-Number-Delta>=0:devel/p5-Test-Number-Delta \
|
||||
p5-Test-Pod>=1:devel/p5-Test-Pod
|
||||
|
||||
|
|
|
@ -13,8 +13,8 @@ COMMENT= OO interface to the 1st and 2nd Digital Sky Surveys
|
|||
|
||||
LICENSE= GPLv2+
|
||||
|
||||
BUILD_DEPENDS= p5-libwww>=0:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-libwww>=0:www/p5-libwww
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -14,11 +14,11 @@ COMMENT= Class for handling astronomical flux quantities
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Astro-WaveBand>=0:astro/p5-Astro-WaveBand \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-WaveBand>=0:astro/p5-Astro-WaveBand \
|
||||
p5-DateTime>=0:devel/p5-DateTime \
|
||||
p5-Misc-Quality>=0:astro/p5-Misc-Quality \
|
||||
p5-Number-Uncertainty>=0:math/p5-Number-Uncertainty
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -13,12 +13,12 @@ COMMENT= OO interface to SIMBAD4
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-HTTP-Message>=0:www/p5-HTTP-Message \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-HTTP-Message>=0:www/p5-HTTP-Message \
|
||||
p5-SOAP-Lite>=0:net/p5-SOAP-Lite \
|
||||
p5-URI>=0:net/p5-URI \
|
||||
p5-XML-DoubleEncodedEntities>=1:textproc/p5-XML-DoubleEncodedEntities \
|
||||
p5-libwww>=0:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-YAML>=0:textproc/p5-YAML
|
||||
|
||||
USES= perl5
|
||||
|
|
|
@ -13,10 +13,10 @@ COMMENT= OO Perl interface to the SIMBAD astronomical database
|
|||
|
||||
LICENSE= GPLv2+
|
||||
|
||||
BUILD_DEPENDS= p5-HTML-Parser>=3.36:www/p5-HTML-Parser \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-HTML-Parser>=3.36:www/p5-HTML-Parser \
|
||||
p5-HTML-Tree>=3.17:www/p5-HTML-Tree \
|
||||
p5-libwww>=5.53:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -14,8 +14,8 @@ COMMENT= Class for obtaining telescope information
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Astro-PAL>=0.99:astro/p5-Astro-PAL
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-PAL>=0.99:astro/p5-Astro-PAL
|
||||
|
||||
NO_ARCH= yes
|
||||
USE_PERL5= modbuild
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Perl interface to gpsbabel
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-File-Which>=0.05:sysutils/p5-File-Which \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-File-Which>=0.05:sysutils/p5-File-Which \
|
||||
p5-Geo-Gpx>=0.25:graphics/p5-Geo-Gpx
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -15,8 +15,8 @@ COMMENT= Perl interface to GPS receivers
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Device-SerialPort>=0.07:comms/p5-Device-SerialPort
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Device-SerialPort>=0.07:comms/p5-Device-SerialPort
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Interface to the Starlink AST library
|
|||
LICENSE= GPLv2 GPLv3
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Astro-FITS-CFITSIO>=0:astro/p5-Astro-FITS-CFITSIO \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Astro-FITS-CFITSIO>=0:astro/p5-Astro-FITS-CFITSIO \
|
||||
p5-Astro-FITS-Header>=0:astro/p5-Astro-FITS-Header
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-Test-Number-Delta>=0:devel/p5-Test-Number-Delta
|
||||
|
||||
USES= perl5
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Retrieve weather information from wunderground.com
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-HTML-Parser>=0:www/p5-HTML-Parser \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-HTML-Parser>=0:www/p5-HTML-Parser \
|
||||
p5-libwww>=0:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USE_PERL5= configure
|
||||
USES= perl5
|
||||
|
|
|
@ -2,7 +2,7 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= metpy
|
||||
PORTVERSION= 0.9.1
|
||||
PORTVERSION= 0.9.2
|
||||
CATEGORIES= astro python
|
||||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1535639725
|
||||
SHA256 (MetPy-0.9.1.tar.gz) = 2dadf750ddb752da13f4ece9b5784587c79c6c86f9a7be8d0cae3d236e403498
|
||||
SIZE (MetPy-0.9.1.tar.gz) = 2226789
|
||||
TIMESTAMP = 1538591637
|
||||
SHA256 (MetPy-0.9.2.tar.gz) = f1181cbbb82b892a0b0915a8899d95c61741520ba6feba3045c4619a139f0135
|
||||
SIZE (MetPy-0.9.2.tar.gz) = 2226983
|
||||
|
|
|
@ -2,6 +2,7 @@
|
|||
|
||||
PORTNAME= cava
|
||||
DISTVERSION= 0.6.1
|
||||
PORTREVISION= 1
|
||||
CATEGORIES= audio
|
||||
|
||||
MAINTAINER= tobik@FreeBSD.org
|
||||
|
@ -10,6 +11,7 @@ COMMENT= Console-based Audio Visualizer for MPD, PulseAudio, and sndio
|
|||
LICENSE= MIT
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= psf2bdf:x11-fonts/psftools
|
||||
LIB_DEPENDS= libfftw3.so:math/fftw3 \
|
||||
libiniparser.so:devel/iniparser
|
||||
|
||||
|
@ -18,11 +20,12 @@ USE_GITHUB= yes
|
|||
GH_ACCOUNT= karlstav
|
||||
|
||||
GNU_CONFIGURE= yes
|
||||
CONFIGURE_ENV= ac_cv_lib_asound_snd_pcm_open=no
|
||||
CONFIGURE_ENV= ac_cv_lib_asound_snd_pcm_open=no \
|
||||
FONT_DIR=${DATADIR}
|
||||
|
||||
INSTALL_TARGET= install-strip
|
||||
|
||||
PLIST_FILES= bin/cava
|
||||
PLIST_FILES= bin/cava ${DATADIR}/cava.fnt
|
||||
PORTDOCS= README.md
|
||||
PORTEXAMPLES= config
|
||||
|
||||
|
@ -39,6 +42,10 @@ SNDIO_LIB_DEPENDS= libsndio.so:audio/sndio
|
|||
pre-configure:
|
||||
@${ECHO_CMD} ${DISTVERSION} > ${WRKSRC}/version
|
||||
|
||||
pre-build:
|
||||
psf2bdf ${WRKSRC}/cava.psf > ${WRKSRC}/cava.bdf
|
||||
vtfontcvt ${WRKSRC}/cava.bdf ${WRKSRC}/cava.fnt
|
||||
|
||||
post-install-DOCS-on:
|
||||
@${MKDIR} ${STAGEDIR}${DOCSDIR}
|
||||
${INSTALL_DATA} ${WRKSRC}/README.md ${STAGEDIR}${DOCSDIR}
|
||||
|
|
|
@ -2,17 +2,21 @@
|
|||
does not recognize
|
||||
- Do not install the Linux-only font
|
||||
|
||||
--- Makefile.am.orig 2018-09-10 08:31:56 UTC
|
||||
--- Makefile.am.orig 2018-05-03 16:07:33 UTC
|
||||
+++ Makefile.am
|
||||
@@ -14,10 +14,8 @@ cava_LDADD = -liniparser
|
||||
@@ -13,11 +13,12 @@ cava_SOURCES = cava.c
|
||||
cava_LDADD = -liniparser
|
||||
cava_LDFLAGS = -L/usr/local/lib -Wl,-rpath /usr/local/lib
|
||||
cava_CPPFLAGS = -DPACKAGE=\"$(PACKAGE)\" -DVERSION=\"$(VERSION)\" \
|
||||
-D_POSIX_SOURCE -D _POSIX_C_SOURCE=200809L
|
||||
- -D_POSIX_SOURCE -D _POSIX_C_SOURCE=200809L
|
||||
-cava_CFLAGS = -std=c99 -Wall -Wextra -Wno-unused-result -Wno-maybe-uninitialized
|
||||
+ -D_POSIX_SOURCE -D _POSIX_C_SOURCE=200809L -DFONT_DIR=\"@FONT_DIR@\"
|
||||
+
|
||||
+cava_CFLAGS = -std=c99 -Wall -Wextra
|
||||
|
||||
-cava_font_dir = @FONT_DIR@
|
||||
cava_font_dir = @FONT_DIR@
|
||||
-cava_font__DATA = cava.psf
|
||||
+cava_font__DATA = cava.fnt
|
||||
|
||||
if !SYSTEM_LIBINIPARSER
|
||||
cava_SOURCES += iniparser/libiniparser.la
|
||||
|
|
|
@ -0,0 +1,15 @@
|
|||
--- cava.c.orig 2018-10-04 05:51:51 UTC
|
||||
+++ cava.c
|
||||
@@ -341,8 +341,12 @@ as of 0.4.0 all options are specified in config file,
|
||||
"/dev/console") == 0) inAtty = 1;
|
||||
|
||||
if (inAtty) {
|
||||
+#ifdef __FreeBSD__
|
||||
+ system("/usr/sbin/vidcontrol -f " FONT_DIR "/cava.fnt >/dev/null 2>&1");
|
||||
+#else
|
||||
system("setfont cava.psf >/dev/null 2>&1");
|
||||
system("setterm -blank 0");
|
||||
+#endif
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
--- output/terminal_ncurses.c.orig 2018-10-04 05:56:00 UTC
|
||||
+++ output/terminal_ncurses.c
|
||||
@@ -215,9 +215,13 @@ int flastd[200], int gradient) {
|
||||
// general: cleanup
|
||||
void cleanup_terminal_ncurses(void) {
|
||||
echo();
|
||||
+#ifdef __FreeBSD__
|
||||
+ system("/usr/sbin/vidcontrol -f >/dev/null 2>&1");
|
||||
+#else
|
||||
system("setfont >/dev/null 2>&1");
|
||||
system("setfont /usr/share/consolefonts/Lat2-Fixed16.psf.gz >/dev/null 2>&1");
|
||||
system("setterm -blank 10");
|
||||
+#endif
|
||||
/*for(int i = 0; i < gradient_size; ++i) {
|
||||
if(the_color_redefinitions[i].color) {
|
||||
init_color(the_color_redefinitions[i].color,
|
|
@ -18,7 +18,7 @@ LIB_DEPENDS= libjack.so:audio/jack \
|
|||
libsndfile.so:audio/libsndfile \
|
||||
liblo.so:audio/liblo
|
||||
|
||||
USES= gmake localbase:ldflags pkgconfig qt:5 shared-mime-info
|
||||
USES= compiler:c++11-lang gl gmake localbase:ldflags pkgconfig qt:5 shared-mime-info
|
||||
GNU_CONFIGURE= yes
|
||||
CONFIGURE_ARGS= --disable-alsa-midi
|
||||
USE_QT= core gui widgets xml buildtools_build qmake_build
|
||||
|
|
|
@ -17,7 +17,7 @@ LIB_DEPENDS= libjack.so:audio/jack \
|
|||
libsamplerate.so:audio/libsamplerate \
|
||||
libsndfile.so:audio/libsndfile
|
||||
|
||||
USES= cmake:outsource pkgconfig
|
||||
USES= cmake:outsource compiler:c++11-lang gnome pkgconfig
|
||||
USE_GITHUB= yes
|
||||
GH_ACCOUNT= openAVproductions
|
||||
GH_PROJECT= openAV-Luppp
|
||||
|
|
|
@ -13,11 +13,9 @@ COMMENT= Realtime Lua as programmable glue in LV2
|
|||
LICENSE= ART20
|
||||
LICENSE_FILE= ${WRKSRC}/COPYING
|
||||
|
||||
BROKEN_powerpc64= fails to build: cc1: unrecognized command line option -std=gnu11
|
||||
|
||||
BUILD_DEPENDS= lv2>0:audio/lv2
|
||||
|
||||
USES= cmake:outsource pkgconfig
|
||||
USES= cmake:outsource compiler:c++11-lang gl pkgconfig
|
||||
USE_XORG= x11 xext
|
||||
USE_GL= gl glu
|
||||
|
||||
|
|
|
@ -13,12 +13,12 @@ COMMENT= Bunch of common helper classes for mpd
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Moose>=0.92:devel/p5-Moose \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Moose>=0.92:devel/p5-Moose \
|
||||
p5-MooseX-Has-Sugar>=0:devel/p5-MooseX-Has-Sugar \
|
||||
p5-MooseX-Types>=0:devel/p5-MooseX-Types \
|
||||
p5-Readonly>=0:devel/p5-Readonly \
|
||||
p5-String-Formatter>=0:devel/p5-String-Formatter
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= modbuild
|
||||
|
|
|
@ -15,7 +15,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-Audio-MPD-Common>=0:audio/p5-Audio-MPD-Common \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Audio-MPD-Common>=0:audio/p5-Audio-MPD-Common \
|
||||
p5-Getopt-Euclid>=0:devel/p5-Getopt-Euclid \
|
||||
p5-List-AllUtils>=0:devel/p5-List-AllUtils \
|
||||
p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \
|
||||
|
@ -24,7 +25,6 @@ BUILD_DEPENDS= p5-Audio-MPD-Common>=0:audio/p5-Audio-MPD-Common \
|
|||
p5-MooseX-SemiAffordanceAccessor>=0:devel/p5-MooseX-SemiAffordanceAccessor \
|
||||
p5-MooseX-Types>=0:devel/p5-MooseX-Types \
|
||||
p5-Proc-Daemon>=0:devel/p5-Proc-Daemon
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-Test-Corpus-Audio-MPD>=1.113282:audio/p5-Test-Corpus-Audio-MPD
|
||||
|
||||
NO_ARCH= yes
|
||||
|
|
|
@ -11,9 +11,9 @@ PKGNAMEPREFIX= p5-
|
|||
MAINTAINER= perl@FreeBSD.org
|
||||
COMMENT= Interface to Musepack file information and APE tag fields
|
||||
|
||||
BUILD_DEPENDS= p5-MP3-Info>=1.20:audio/p5-MP3-Info \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-MP3-Info>=1.20:audio/p5-MP3-Info \
|
||||
p5-Audio-Scan>=0.85:audio/p5-Audio-Scan
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Perl interface to Last.fm and AudioScrobbler
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Config-IniFiles>=0:devel/p5-Config-IniFiles \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Config-IniFiles>=0:devel/p5-Config-IniFiles \
|
||||
p5-libwww>=5:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Perl modules for reading and writing Microsoft WAV files
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Inline>=0:devel/p5-Inline \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Inline>=0:devel/p5-Inline \
|
||||
p5-Inline-C>=0:devel/p5-Inline-C
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,8 +14,8 @@ COMMENT= Audio manipulation routines for perl
|
|||
LICENSE= GPLv2 GPLv3
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Math-GSL>=0:math/p5-Math-GSL
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Math-GSL>=0:math/p5-Math-GSL
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,8 +14,8 @@ COMMENT= Search and sort MP3 files based on their ID3 tags
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-MP3-Info>=0:audio/p5-MP3-Info
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-MP3-Info>=0:audio/p5-MP3-Info
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -15,9 +15,9 @@ COMMENT= Assorted utilities for manipulating MP3 files via MP3::Tag
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-MP3-Tag>=1.13:audio/p5-MP3-Tag \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-MP3-Tag>=1.13:audio/p5-MP3-Tag \
|
||||
p5-Text-NeatTemplate>=0.10.01:textproc/p5-Text-NeatTemplate
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5 shebangfix
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -12,9 +12,9 @@ COMMENT= Perl interface for the MusicBrainz libdiscid library
|
|||
|
||||
LICENSE= GPLv2
|
||||
|
||||
BUILD_DEPENDS= p5-Test-Pod>=0:devel/p5-Test-Pod
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Test-Pod>=0:devel/p5-Test-Pod
|
||||
LIB_DEPENDS= libdiscid.so:audio/libdiscid
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= localbase pkgconfig perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,9 +14,9 @@ COMMENT= Get the CDID of an audio CD and query the FreeDB servers
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-CDDB-File>=0:audio/p5-CDDB-File \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-CDDB-File>=0:audio/p5-CDDB-File \
|
||||
p5-Moo>=0:devel/p5-Moo
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= alias perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -13,11 +13,11 @@ COMMENT= Manipulate / fetch info from Ogg-Vorbis audio files
|
|||
LICENSE= GPLv2 GPLv3
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Inline>=0:devel/p5-Inline \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Inline>=0:devel/p5-Inline \
|
||||
p5-Inline-C>=0:devel/p5-Inline-C
|
||||
LIB_DEPENDS= libogg.so:audio/libogg \
|
||||
libvorbis.so:audio/libvorbis
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
MAKE_JOBS_UNSAFE= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -11,10 +11,10 @@ PKGNAMEPREFIX= p5-
|
|||
MAINTAINER= perl@FreeBSD.org
|
||||
COMMENT= Automate launching of fake mdp for testing purposes
|
||||
|
||||
BUILD_DEPENDS= p5-File-ShareDir-PathClass>0:devel/p5-File-ShareDir-PathClass \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-File-ShareDir-PathClass>0:devel/p5-File-ShareDir-PathClass \
|
||||
p5-Path-Class>=0:devel/p5-Path-Class \
|
||||
p5-Readonly>=0:devel/p5-Readonly
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= modbuild
|
||||
|
|
|
@ -7,7 +7,7 @@ CATEGORIES= audio python
|
|||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= feld@FreeBSD.org
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= Python Musicbrainz NGS site bindings
|
||||
|
||||
LICENSE= BSD2CLAUSE ISCL
|
||||
|
|
|
@ -8,7 +8,7 @@ CATEGORIES= audio python
|
|||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= feld@FreeBSD.org
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= Bindings for Chromaprint acoustic fingerprinting and the Acoustid API
|
||||
|
||||
LICENSE= MIT
|
||||
|
|
|
@ -7,7 +7,7 @@ CATEGORIES= audio python
|
|||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= feld@FreeBSD.org
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= Python interface to Last.fm and Libre.fm
|
||||
|
||||
LICENSE= APACHE20
|
||||
|
|
|
@ -3,7 +3,7 @@
|
|||
|
||||
PORTNAME= perftest
|
||||
DISTVERSIONPREFIX= V
|
||||
DISTVERSION= 4.2-0.8
|
||||
DISTVERSION= 4.4-0.3
|
||||
CATEGORIES= benchmarks
|
||||
|
||||
MAINTAINER= slavash@FreeBSD.org
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1529065479
|
||||
SHA256 (linux-rdma-perftest-V4.2-0.8_GH0.tar.gz) = 25e433e6ef13a634dfcf9c4b21e74cdc3bdcc5205b6fd88ee004d0671bcc82f4
|
||||
SIZE (linux-rdma-perftest-V4.2-0.8_GH0.tar.gz) = 139323
|
||||
TIMESTAMP = 1538562078
|
||||
SHA256 (linux-rdma-perftest-V4.4-0.3_GH0.tar.gz) = 76cb6ae44e8bc1f29d1482ab4e5eb8df4d3cea29969598b2871f0d35512b37f7
|
||||
SIZE (linux-rdma-perftest-V4.4-0.3_GH0.tar.gz) = 139473
|
||||
|
|
|
@ -3,7 +3,7 @@
|
|||
|
||||
PORTNAME= phoronix-test-suite
|
||||
DISTVERSIONPREFIX= v
|
||||
DISTVERSION= 8.0.1
|
||||
DISTVERSION= 8.2.0
|
||||
CATEGORIES= benchmarks
|
||||
PKGNAMESUFFIX= ${PHP_PKGNAMESUFFIX}
|
||||
|
||||
|
@ -13,6 +13,8 @@ COMMENT= Phoronix Benchmarking Suite
|
|||
LICENSE= GPLv3
|
||||
LICENSE_FILE= ${WRKSRC}/COPYING
|
||||
|
||||
RUN_DEPENDS= sudo:security/sudo
|
||||
|
||||
USES= php:cli,build,flavors python
|
||||
USE_GITHUB= yes
|
||||
USE_PHP= curl dom gd json openssl pcntl posix simplexml zip zlib
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1531758479
|
||||
SHA256 (phoronix-test-suite-phoronix-test-suite-v8.0.1_GH0.tar.gz) = 8bfe972c601884f2bbbf4d5069c7691637e8a30af55d2a9597dbe53911b49081
|
||||
SIZE (phoronix-test-suite-phoronix-test-suite-v8.0.1_GH0.tar.gz) = 846244
|
||||
TIMESTAMP = 1538401066
|
||||
SHA256 (phoronix-test-suite-phoronix-test-suite-v8.2.0_GH0.tar.gz) = cb92231040fd09a98a97d6620bc98758774731372f8a41b58b85357c0449904c
|
||||
SIZE (phoronix-test-suite-phoronix-test-suite-v8.2.0_GH0.tar.gz) = 860755
|
||||
|
|
|
@ -131,7 +131,6 @@
|
|||
SUBDIR += tRNAscan-SE
|
||||
SUBDIR += t_coffee
|
||||
SUBDIR += tabixpp
|
||||
SUBDIR += tinker
|
||||
SUBDIR += treepuzzle
|
||||
SUBDIR += trimadap
|
||||
SUBDIR += trimmomatic
|
||||
|
|
|
@ -3,6 +3,7 @@
|
|||
PORTNAME= bowtie2
|
||||
PORTVERSION= 2.3.3.1
|
||||
DISTVERSIONPREFIX= v
|
||||
PORTREVISION= 1
|
||||
CATEGORIES= biology
|
||||
|
||||
MAINTAINER= jwb@FreeBSD.org
|
||||
|
|
|
@ -2,56 +2,33 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= ncbi-toolkit
|
||||
PORTVERSION= 2012.06.20 # containing BLAST v2.2.27
|
||||
PORTREVISION= 1
|
||||
DISTVERSION= 2017.01.06 # containing BLAST v2.2.27 (? is this true)
|
||||
CATEGORIES= biology
|
||||
MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
|
||||
DISTNAME= ncbi
|
||||
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
|
||||
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
MAINTAINER= yuri@FreeBSD.org
|
||||
COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
|
||||
|
||||
LIB_DEPENDS= libpng.so:graphics/png
|
||||
LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
|
||||
libgmp.so:math/gmp \
|
||||
libgnutls.so:security/gnutls \
|
||||
libhogweed.so:security/nettle \
|
||||
libidn2.so:dns/libidn2 \
|
||||
libnettle.so:security/nettle \
|
||||
libp11-kit.so:security/p11-kit \
|
||||
libpng.so:graphics/png \
|
||||
libtasn1.so:security/libtasn1 \
|
||||
libtspi.so:security/trousers \
|
||||
libunistring.so:devel/libunistring \
|
||||
libXp.so:x11/libXp
|
||||
|
||||
USES= iconv motif
|
||||
MAKE_JOBS_UNSAFE= yes
|
||||
USES= gettext-runtime iconv jpeg motif
|
||||
USE_XORG= x11 xau xext xft xmu xrender xt
|
||||
|
||||
SUB_FILES= pkg-message
|
||||
|
||||
# These are the executables we install.
|
||||
#
|
||||
# We follow Debian in the separation of the port in three
|
||||
# main categories and in the selection of programs that
|
||||
# are installed in each case. This Makes Sense (TM).
|
||||
# Thus, we drop a handful of programs that are useful only as tests
|
||||
# or code examples
|
||||
# (credit goes to Aaron Ucko, the Debian maintainer of the NCBI stuff)
|
||||
# Right now the port installs all the executables below, this may
|
||||
# change in the future with the addition of selectable knobs or
|
||||
# new slave ports
|
||||
|
||||
TOOLKIT_EXE= asn2ff asn2gb asn2idx asn2xml asndhuff asntool cdscan \
|
||||
checksub debruijn demo_regexp demo_regexp_grep dosimple \
|
||||
entrcmd errhdr fa2htgs findspl gene2xml getmesh getpub \
|
||||
gil2bin idfetch indexpub makeset ncbisort seqtest tbl2asn \
|
||||
vecscreen
|
||||
BLAST_EXE= bl2seq blastall blastcl3 blastclust blastpgp copymat \
|
||||
fastacmd formatdb formatrpsdb impala makemat megablast \
|
||||
rpsblast seedtop taxblast
|
||||
X11_EXE= Nentrez Psequin ddv entrez2 sbtedit udv
|
||||
|
||||
# and these are the man pages we have
|
||||
MAN_FILES= Psequin.1 asn2ff.1 asn2idx.1 asn2xml.1 asndhuff.1 \
|
||||
asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 \
|
||||
copymat.1 ddv.1 debruijn.1 entrez2.1 errhdr.1 fa2htgs.1 \
|
||||
fastacmd.1 findspl.1 formatdb.1 formatrpsdb.1 getmesh.1 \
|
||||
getpub.1 gil2bin.1 idfetch.1 indexpub.1 makemat.1 \
|
||||
taxblast.1 tbl2asn.1 udv.1 vecscreen.1
|
||||
|
||||
MAN_LINKS= bl2seq blastall blastcl3 blastpgp impala megablast \
|
||||
seedtop rpsblast
|
||||
|
||||
OPTIONS_DEFINE= DOCS
|
||||
|
||||
post-patch:
|
||||
|
@ -73,30 +50,25 @@ post-patch:
|
|||
# and we use it
|
||||
|
||||
do-build:
|
||||
cd ${WRKDIR}; ./${DISTNAME}/make/makedis.csh
|
||||
@cd ${WRKDIR} && ./${DISTNAME}/make/makedis.csh
|
||||
|
||||
# the ncbi-toolkit does not provide an install target
|
||||
# we thus roll our own
|
||||
|
||||
do-install:
|
||||
(cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} ${BLAST_EXE} \
|
||||
${TOOLKIT_EXE} ${X11_EXE} ${STAGEDIR}${PREFIX}/bin)
|
||||
cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} * ${STAGEDIR}${PREFIX}/bin
|
||||
@${MKDIR} ${STAGEDIR}${PREFIX}/lib/${DISTNAME}
|
||||
(cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \
|
||||
${STAGEDIR}${PREFIX}/lib/${DISTNAME})
|
||||
cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \
|
||||
${STAGEDIR}${PREFIX}/lib/${DISTNAME}
|
||||
@${MKDIR} ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
|
||||
(cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \
|
||||
${STAGEDIR}${PREFIX}/include/${DISTNAME})
|
||||
(cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \
|
||||
${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect)
|
||||
(cd ${WRKSRC}/doc/man && ${INSTALL_MAN} ${MAN_FILES} \
|
||||
${STAGEDIR}${MANPREFIX}/man/man1)
|
||||
.for man in ${MAN_LINKS}
|
||||
${LN} -s ${MANPREFIX}/man/man1/blast.1.gz \
|
||||
${STAGEDIR}${PREFIX}/man/man1/${man}.1.gz
|
||||
.endfor
|
||||
cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \
|
||||
${STAGEDIR}${PREFIX}/include/${DISTNAME}
|
||||
cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \
|
||||
${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
|
||||
cd ${WRKSRC}/doc/man && ${INSTALL_MAN} * \
|
||||
${STAGEDIR}${MANPREFIX}/man/man1
|
||||
@${MKDIR} ${STAGEDIR}${DATADIR}
|
||||
(cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR})
|
||||
cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}
|
||||
|
||||
do-install-DOCS-on:
|
||||
@${MKDIR} ${STAGEDIR}${DOCSDIR}
|
||||
|
|
|
@ -1,2 +1,3 @@
|
|||
SHA256 (ncbi-toolkit-2012.06.20/ncbi.tar.gz) = 603c9a4ade2a6f2f8e412558b732924d78fae403d225706e2ac38d553b08073c
|
||||
SIZE (ncbi-toolkit-2012.06.20/ncbi.tar.gz) = 68428744
|
||||
TIMESTAMP = 1538934016
|
||||
SHA256 (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 4b88aaad8f953b1b50bc7d06f3a5920f0d589d2c9a26c709199f8347905f5867
|
||||
SIZE (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 155731358
|
||||
|
|
|
@ -1,11 +0,0 @@
|
|||
--- corelib/ncbimisc.c.orig
|
||||
+++ corelib/ncbimisc.c
|
||||
@@ -1266,7 +1266,7 @@
|
||||
if (len < 1) return NULL;
|
||||
|
||||
rsult = (Nlm_CharPtr) MemNew (len + 3);
|
||||
- if (rsult == NULL) return;
|
||||
+ if (rsult == NULL) return NULL;
|
||||
tmp = rsult;
|
||||
|
||||
for (i = 0; /* local [i] != NULL */ i < numitems; i++) {
|
|
@ -1,58 +0,0 @@
|
|||
--- make/makenet.unx.orig 2008-12-11 00:23:29.000000000 +0300
|
||||
+++ make/makenet.unx 2011-04-14 00:26:38.440426134 +0400
|
||||
@@ -67,6 +67,7 @@
|
||||
VIB =
|
||||
VIBLIBS= -lXm -lXmu -lXt -lX11
|
||||
VIBLIBS=
|
||||
+USERLIBS = -lXft -lpng -ljpeg %%ICONV_LIB%%
|
||||
SEQUIN_OPTS =
|
||||
LIBCOPY = cp -p
|
||||
SRCCOPY = ./ln-if-absent
|
||||
@@ -934,17 +935,17 @@
|
||||
$(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \
|
||||
$(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) \
|
||||
$(LIBCOMPADJ) $(LIB2) $(LIB1) \
|
||||
- $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
|
||||
udv : $(OBJUDV)
|
||||
$(CC) -o udv $(LDFLAGS) $(OBJUDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \
|
||||
$(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) \
|
||||
$(LIB23) $(LIBCOMPADJ) $(LIB2) \
|
||||
- $(LIB1) $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
|
||||
Nentrez : entrez.c $(ULIB31)
|
||||
$(CC) -o Nentrez $(LDFLAGS) entrez.c $(LIB41) $(LIB31) $(LIB30) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \
|
||||
- $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB8) $(LIB7) $(NETCLILIB) $(LIB5) $(LIB4) $(LIB3) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB8) $(LIB7) $(NETCLILIB) $(LIB5) $(LIB4) $(LIB3) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
|
||||
# left this in (Tentrez) for script backwards compatibility
|
||||
Tentrez : entrez.c $(ULIB31)
|
||||
@@ -1140,7 +1141,7 @@
|
||||
entrez2 : entrez2.c
|
||||
$(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) \
|
||||
$(LIB61) $(LIB60) $(LIB22) $(LIB23) $(LIBCOMPADJ) \
|
||||
- $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
$(VIB_POST_LINK) entrez2
|
||||
|
||||
# demo program (spidey)
|
||||
@@ -1421,7 +1422,7 @@
|
||||
$(CC) -o Psequin -I. $(LDFLAGS) -UINTERNAL_NCBI_SEQUIN $(SRCSEQUIN) \
|
||||
$(LIB30) $(LIB45) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) \
|
||||
$(LIB40) $(LIB41) $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB11) \
|
||||
- $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
$(VIB_POST_LINK) Psequin
|
||||
|
||||
# 'sbtedit' Submission Template Editor
|
||||
@@ -1433,7 +1434,7 @@
|
||||
$(CC) -o sbtedit -I. $(LDFLAGS) -UINTERNAL_NCBI_SEQUIN $(SRCSBTEDIT) \
|
||||
$(LIB30) $(LIB45) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) \
|
||||
$(LIB40) $(LIB41) $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB11) \
|
||||
- $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
|
||||
+ $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS)
|
||||
$(VIB_POST_LINK) sbtedit
|
||||
|
||||
# 'streamer' Sequinesque Stream Editor
|
|
@ -16,4 +16,4 @@ From the README:
|
|||
have found it a useful and stable basis for a number of tools and
|
||||
applications.
|
||||
|
||||
WWW: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
|
||||
WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
|
||||
|
|
|
@ -6,14 +6,9 @@ bin/asn2idx
|
|||
bin/asn2xml
|
||||
bin/asndhuff
|
||||
bin/asntool
|
||||
bin/bl2seq
|
||||
bin/blastall
|
||||
bin/blastcl3
|
||||
bin/blastclust
|
||||
bin/blastpgp
|
||||
bin/cdscan
|
||||
bin/checksub
|
||||
bin/copymat
|
||||
bin/ddv
|
||||
bin/debruijn
|
||||
bin/demo_regexp
|
||||
|
@ -23,27 +18,22 @@ bin/entrcmd
|
|||
bin/entrez2
|
||||
bin/errhdr
|
||||
bin/fa2htgs
|
||||
bin/fastacmd
|
||||
bin/findspl
|
||||
bin/formatdb
|
||||
bin/formatrpsdb
|
||||
bin/gene2xml
|
||||
bin/getmesh
|
||||
bin/getpub
|
||||
bin/gil2bin
|
||||
bin/idfetch
|
||||
bin/impala
|
||||
bin/indexpub
|
||||
bin/makemat
|
||||
bin/makeset
|
||||
bin/megablast
|
||||
bin/ncbisort
|
||||
bin/rpsblast
|
||||
bin/sbtedit
|
||||
bin/seedtop
|
||||
bin/seqtest
|
||||
bin/taxblast
|
||||
bin/tbl2asn
|
||||
bin/test_regexp
|
||||
bin/testcore
|
||||
bin/testobj
|
||||
bin/testval
|
||||
bin/udv
|
||||
bin/vecscreen
|
||||
include/ncbi/FSpCompat.h
|
||||
|
@ -186,7 +176,10 @@ include/ncbi/connect/ncbi_heapmgr.h
|
|||
include/ncbi/connect/ncbi_host_info.h
|
||||
include/ncbi/connect/ncbi_host_infop.h
|
||||
include/ncbi/connect/ncbi_http_connector.h
|
||||
include/ncbi/connect/ncbi_ipv6.h
|
||||
include/ncbi/connect/ncbi_lb.h
|
||||
include/ncbi/connect/ncbi_lbos.h
|
||||
include/ncbi/connect/ncbi_lbosp.h
|
||||
include/ncbi/connect/ncbi_lbsmd.h
|
||||
include/ncbi/connect/ncbi_local.h
|
||||
include/ncbi/connect/ncbi_memory_connector.h
|
||||
|
@ -564,6 +557,7 @@ include/ncbi/xmlblast.h
|
|||
lib/ncbi/libblast.a
|
||||
lib/ncbi/libblastapi.a
|
||||
lib/ncbi/libblastcompadj.a
|
||||
lib/ncbi/libconnssl.a
|
||||
lib/ncbi/libddvlib.a
|
||||
lib/ncbi/libncbi.a
|
||||
lib/ncbi/libncbiCacc.a
|
||||
|
@ -586,41 +580,46 @@ lib/ncbi/libvibgif.a
|
|||
lib/ncbi/libvibnet.a
|
||||
lib/ncbi/libvibrant.a
|
||||
man/man1/Psequin.1.gz
|
||||
man/man1/asn2all.1.gz
|
||||
man/man1/asn2asn.1.gz
|
||||
man/man1/asn2ff.1.gz
|
||||
man/man1/asn2fsa.1.gz
|
||||
man/man1/asn2gb.1.gz
|
||||
man/man1/asn2idx.1.gz
|
||||
man/man1/asn2xml.1.gz
|
||||
man/man1/asndhuff.1.gz
|
||||
man/man1/asndisc.1.gz
|
||||
man/man1/asnmacro.1.gz
|
||||
man/man1/asntool.1.gz
|
||||
man/man1/bl2seq.1.gz
|
||||
man/man1/blast.1.gz
|
||||
man/man1/blastall.1.gz
|
||||
man/man1/asnval.1.gz
|
||||
man/man1/blastcl3.1.gz
|
||||
man/man1/blastclust.1.gz
|
||||
man/man1/blastpgp.1.gz
|
||||
man/man1/cdscan.1.gz
|
||||
man/man1/checksub.1.gz
|
||||
man/man1/copymat.1.gz
|
||||
man/man1/cleanasn.1.gz
|
||||
man/man1/ddv.1.gz
|
||||
man/man1/debruijn.1.gz
|
||||
man/man1/entrez2.1.gz
|
||||
man/man1/errhdr.1.gz
|
||||
man/man1/fa2htgs.1.gz
|
||||
man/man1/fastacmd.1.gz
|
||||
man/man1/findspl.1.gz
|
||||
man/man1/formatdb.1.gz
|
||||
man/man1/formatrpsdb.1.gz
|
||||
man/man1/fmerge.1.gz
|
||||
man/man1/gbseqget.1.gz
|
||||
man/man1/gene2xml.1.gz
|
||||
man/man1/getmesh.1.gz
|
||||
man/man1/getpub.1.gz
|
||||
man/man1/gil2bin.1.gz
|
||||
man/man1/idfetch.1.gz
|
||||
man/man1/impala.1.gz
|
||||
man/man1/indexpub.1.gz
|
||||
man/man1/makemat.1.gz
|
||||
man/man1/megablast.1.gz
|
||||
man/man1/rpsblast.1.gz
|
||||
man/man1/seedtop.1.gz
|
||||
man/man1/taxblast.1.gz
|
||||
man/man1/insdseqget.1.gz
|
||||
man/man1/makeset.1.gz
|
||||
man/man1/nps2gps.1.gz
|
||||
man/man1/sbtedit.1.gz
|
||||
man/man1/sortbyquote.1.gz
|
||||
man/man1/spidey.1.gz
|
||||
man/man1/subfuse.1.gz
|
||||
man/man1/tbl2asn.1.gz
|
||||
man/man1/trna2sap.1.gz
|
||||
man/man1/trna2tbl.1.gz
|
||||
man/man1/udv.1.gz
|
||||
man/man1/vecscreen.1.gz
|
||||
%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
|
||||
|
@ -629,26 +628,8 @@ man/man1/vecscreen.1.gz
|
|||
%%PORTDOCS%%%%DOCSDIR%%/access.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/bl2seq.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blast.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blastall.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blastclust.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blastdb.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blastftp.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/blastpgp.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/fastacmd.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/filter.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/formatdb.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/formatrpsdb.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/history.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/impala.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/index.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/megablast.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/netblast.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/rpsblast.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/scoring.pdf
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/seedtop.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/blast/web_blast.pl
|
||||
%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html
|
||||
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README
|
||||
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc
|
||||
|
@ -761,12 +742,36 @@ man/man1/vecscreen.1.gz
|
|||
%%DATADIR%%/LSURef_93.fasta.nhr
|
||||
%%DATADIR%%/LSURef_93.fasta.nin
|
||||
%%DATADIR%%/LSURef_93.fasta.nsq
|
||||
%%DATADIR%%/LSU_chloro_rRNA.nhr
|
||||
%%DATADIR%%/LSU_chloro_rRNA.nin
|
||||
%%DATADIR%%/LSU_chloro_rRNA.nsq
|
||||
%%DATADIR%%/LSU_mito_rRNA.nhr
|
||||
%%DATADIR%%/LSU_mito_rRNA.nin
|
||||
%%DATADIR%%/LSU_mito_rRNA.nsq
|
||||
%%DATADIR%%/LSU_nomito-nochloro-noplastid.nhr
|
||||
%%DATADIR%%/LSU_nomito-nochloro-noplastid.nin
|
||||
%%DATADIR%%/LSU_nomito-nochloro-noplastid.nsq
|
||||
%%DATADIR%%/LSU_plastid.nhr
|
||||
%%DATADIR%%/LSU_plastid.nin
|
||||
%%DATADIR%%/LSU_plastid.nsq
|
||||
%%DATADIR%%/PAM250
|
||||
%%DATADIR%%/PAM30
|
||||
%%DATADIR%%/PAM70
|
||||
%%DATADIR%%/SSU-mito-rRNA.nhr
|
||||
%%DATADIR%%/SSU-mito-rRNA.nin
|
||||
%%DATADIR%%/SSU-mito-rRNA.nsq
|
||||
%%DATADIR%%/SSURef_93.fasta.nhr
|
||||
%%DATADIR%%/SSURef_93.fasta.nin
|
||||
%%DATADIR%%/SSURef_93.fasta.nsq
|
||||
%%DATADIR%%/SSU_chloro_rRNA.nhr
|
||||
%%DATADIR%%/SSU_chloro_rRNA.nin
|
||||
%%DATADIR%%/SSU_chloro_rRNA.nsq
|
||||
%%DATADIR%%/SSU_nomito_nochloro_noplastid.nhr
|
||||
%%DATADIR%%/SSU_nomito_nochloro_noplastid.nin
|
||||
%%DATADIR%%/SSU_nomito_nochloro_noplastid.nsq
|
||||
%%DATADIR%%/SSU_plast_rRNA.nhr
|
||||
%%DATADIR%%/SSU_plast_rRNA.nin
|
||||
%%DATADIR%%/SSU_plast_rRNA.nsq
|
||||
%%DATADIR%%/UniVec.nhr
|
||||
%%DATADIR%%/UniVec.nin
|
||||
%%DATADIR%%/UniVec.nsq
|
||||
|
@ -775,6 +780,9 @@ man/man1/vecscreen.1.gz
|
|||
%%DATADIR%%/UniVec_Core.nsq
|
||||
%%DATADIR%%/asn2ff.prt
|
||||
%%DATADIR%%/autofix.prt
|
||||
%%DATADIR%%/bacteria-archea16SrRNA.nhr
|
||||
%%DATADIR%%/bacteria-archea16SrRNA.nin
|
||||
%%DATADIR%%/bacteria-archea16SrRNA.nsq
|
||||
%%DATADIR%%/blast.prt
|
||||
%%DATADIR%%/bstdt.prt
|
||||
%%DATADIR%%/bstdt.val
|
||||
|
|
|
@ -14,8 +14,8 @@ COMMENT= Perl5 interface to the ACEDB genome database system
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Cache-Cache>=0:devel/p5-Cache-Cache
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Cache-Cache>=0:devel/p5-Cache-Cache
|
||||
|
||||
MAKE_JOBS_UNSAFE= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -16,8 +16,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -14,8 +14,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl
|
||||
|
||||
NO_ARCH= yes
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,10 +14,10 @@ COMMENT= Perl extension for the DAS (HTTP+XML) Protocol
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Readonly>=1.03:devel/p5-Readonly \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Readonly>=1.03:devel/p5-Readonly \
|
||||
p5-libwww>=0:www/p5-libwww \
|
||||
p5-WWW-Curl>=4.07:www/p5-WWW-Curl
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= modbuild
|
||||
|
|
|
@ -14,10 +14,10 @@ COMMENT= Client-side library for Distributed Genome Annotation System
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
|
||||
p5-HTML-Parser>=3:www/p5-HTML-Parser \
|
||||
p5-libwww>=5:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -14,12 +14,12 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
|
||||
p5-Tree-DAG_Node>=0:devel/p5-Tree-DAG_Node \
|
||||
p5-URI>=0:net/p5-URI \
|
||||
p5-XML-DOM>=0:textproc/p5-XML-DOM \
|
||||
p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,10 +14,10 @@ COMMENT= Fast low-level functions for parsing and formatting GFF3
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-File-ReadBackwards>=0:devel/p5-File-ReadBackwards \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-File-ReadBackwards>=0:devel/p5-File-ReadBackwards \
|
||||
p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \
|
||||
p5-URI>=0:net/p5-URI
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-IO-String>=0:devel/p5-IO-String
|
||||
|
||||
USES= perl5
|
||||
|
|
|
@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
|
|||
MAINTAINER= perl@FreeBSD.org
|
||||
COMMENT= Perl Interface to G-language
|
||||
|
||||
BUILD_DEPENDS= p5-libwww>=5:www/p5-libwww
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-libwww>=5:www/p5-libwww
|
||||
|
||||
USES= perl5
|
||||
USE_PERL5= configure
|
||||
|
|
|
@ -14,14 +14,14 @@ COMMENT= Generate GD Images of Bio::Seq Objects
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Bio-Coordinate>=1.007000:biology/p5-Bio-Coordinate \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Bio-Coordinate>=1.007000:biology/p5-Bio-Coordinate \
|
||||
p5-Bio-SCF>=1.01:biology/p5-Bio-SCF \
|
||||
p5-BioPerl>=1.007000:biology/p5-BioPerl \
|
||||
p5-CGI>=0:www/p5-CGI \
|
||||
p5-GD>=2.30:graphics/p5-GD \
|
||||
p5-GD-SVG>=0.32:graphics/p5-GD-SVG \
|
||||
p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
NO_ARCH= yes
|
||||
USES= perl5
|
||||
|
|
|
@ -13,7 +13,8 @@ COMMENT= Data model and utility API for the MAGE-TAB format
|
|||
|
||||
LICENSE= GPLv2
|
||||
|
||||
BUILD_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
|
||||
p5-DateTime>=0.43.02:devel/p5-DateTime \
|
||||
p5-DateTime-Format-DateManip>=0.04:devel/p5-DateTime-Format-DateManip \
|
||||
p5-Email-Valid>=0.179:mail/p5-Email-Valid \
|
||||
|
@ -24,7 +25,6 @@ BUILD_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
|
|||
p5-Parse-RecDescent>=1.965.001:devel/p5-Parse-RecDescent \
|
||||
p5-Text-CSV_XS>=0.32:textproc/p5-Text-CSV_XS \
|
||||
p5-URI>=1.35:net/p5-URI
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-Test-Exception>=0.26:devel/p5-Test-Exception
|
||||
|
||||
USES= perl5
|
||||
|
|
|
@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
|
|||
MAINTAINER= perl@FreeBSD.org
|
||||
COMMENT= Object-oriented Perl API for the NEXUS file format
|
||||
|
||||
BUILD_DEPENDS= p5-Clone-PP>=1.02:devel/p5-Clone-PP
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Clone-PP>=1.02:devel/p5-Clone-PP
|
||||
|
||||
TEST_DEPENDS= p5-Test-Deep>=0.106:devel/p5-Test-Deep \
|
||||
p5-Test-Pod>=0:devel/p5-Test-Pod \
|
||||
|
|
|
@ -15,7 +15,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE_ART10= ${WRKSRC}/COPYING
|
||||
|
||||
BUILD_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
|
||||
p5-BioPerl>=0:biology/p5-BioPerl \
|
||||
p5-GD>=0:graphics/p5-GD \
|
||||
p5-Math-CDF>=0:math/p5-Math-CDF \
|
||||
|
@ -29,7 +30,6 @@ BUILD_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
|
|||
p5-XML-Twig>=0:textproc/p5-XML-Twig \
|
||||
p5-XML-XML2JSON>=0:textproc/p5-XML-XML2JSON \
|
||||
p5-libxml>=0:textproc/p5-libxml
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-JSON>=0:converters/p5-JSON
|
||||
|
||||
NO_ARCH= yes
|
||||
|
|
|
@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
|
|||
MAINTAINER= wen@FreeBSD.org
|
||||
COMMENT= Read and Update SCF Chromatographic Sequence Files
|
||||
|
||||
BUILD_DEPENDS= ${LOCALBASE}/include/io_lib/scf.h:biology/iolib
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= ${LOCALBASE}/include/io_lib/scf.h:biology/iolib
|
||||
|
||||
CFLAGS+= -I${LOCALBASE}/include
|
||||
LDFLAGS+= -L${LOCALBASE}/lib
|
||||
|
|
|
@ -15,7 +15,8 @@ LICENSE= ART10 GPLv1+
|
|||
LICENSE_COMB= dual
|
||||
LICENSE_FILE_ART10= ${WRKSRC}/LICENSE
|
||||
|
||||
BUILD_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
|
||||
p5-Bio-FeatureIO>=0:biology/p5-Bio-FeatureIO \
|
||||
p5-BioPerl>=1.007000:biology/p5-BioPerl \
|
||||
p5-Config-Any>=0:devel/p5-Config-Any \
|
||||
|
@ -23,7 +24,6 @@ BUILD_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
|
|||
p5-IO-String>=0:devel/p5-IO-String \
|
||||
p5-IPC-Run>=0:devel/p5-IPC-Run \
|
||||
p5-XML-Twig>=0:textproc/p5-XML-Twig
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
|
||||
CONFLICTS= p5-bioperl-run-1.[13579]*
|
||||
|
||||
|
|
|
@ -14,7 +14,8 @@ COMMENT= Collection of Perl modules for bioinformatics
|
|||
LICENSE= ART10 GPLv1+
|
||||
LICENSE_COMB= dual
|
||||
|
||||
BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
|
||||
BUILD_DEPENDS= ${RUN_DEPENDS}
|
||||
RUN_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
|
||||
p5-Array-Compare>=0:misc/p5-Array-Compare \
|
||||
p5-CGI>=0:www/p5-CGI \
|
||||
p5-Clone>=0:devel/p5-Clone \
|
||||
|
@ -51,7 +52,6 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
|
|||
p5-YAML>=0:textproc/p5-YAML \
|
||||
p5-libwww>=0:www/p5-libwww \
|
||||
p5-libxml>=0:textproc/p5-libxml
|
||||
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
||||
TEST_DEPENDS= p5-Test-Most>=0:devel/p5-Test-Most \
|
||||
p5-URI>=0:net/p5-URI
|
||||
|
||||
|
|
|
@ -1,9 +1,9 @@
|
|||
# $FreeBSD$
|
||||
|
||||
PORTNAME= biom-format
|
||||
PORTVERSION= 2.1.6
|
||||
PORTREVISION= 2
|
||||
PORTVERSION= 2.1.7
|
||||
CATEGORIES= biology python
|
||||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= jrm@FreeBSD.org
|
||||
|
@ -12,23 +12,21 @@ COMMENT= Biological Observation Matrix (BIOM) Format Project
|
|||
LICENSE= BSD3CLAUSE
|
||||
|
||||
BUILD_DEPENDS= ${PYNUMPY}
|
||||
RUN_DEPENDS= ${PYNUMPY} \
|
||||
${PYTHON_PKGNAMEPREFIX}click>=6.6:devel/py-click@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}future>=0.15.2:devel/py-future@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}h5py>=2.6.0:science/py-h5py@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}scipy>=0.16.1:science/py-scipy@${PY_FLAVOR}
|
||||
|
||||
USE_GITHUB= yes
|
||||
GH_ACCOUNT= biocore
|
||||
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
|
||||
${PYNUMPY} \
|
||||
${PYTHON_PKGNAMEPREFIX}future>=0.16.0:devel/py-future@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}scipy>=0.13.0:science/py-scipy@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
|
||||
${PYTHON_PKGNAMEPREFIX}six>=1.10.0:devel/py-six@${PY_FLAVOR}
|
||||
|
||||
USES= python
|
||||
USE_PYTHON= autoplist distutils
|
||||
USE_PYTHON= autoplist concurrent distutils
|
||||
|
||||
.include <bsd.port.pre.mk>
|
||||
|
||||
.if ${PYTHON_REL} < 3000
|
||||
RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyqi>=0.2.0:devel/py-pyqi@${PY_FLAVOR}
|
||||
RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyqi>0:devel/py-pyqi@${PY_FLAVOR}
|
||||
.endif
|
||||
|
||||
post-extract:
|
||||
|
|
|
@ -1,3 +1,3 @@
|
|||
TIMESTAMP = 1493465225
|
||||
SHA256 (biocore-biom-format-2.1.6_GH0.tar.gz) = f2daddb634c540e10d04e4f71174da98f57d7f95472f02c358df4ca82e3f9921
|
||||
SIZE (biocore-biom-format-2.1.6_GH0.tar.gz) = 11997159
|
||||
TIMESTAMP = 1538769748
|
||||
SHA256 (biom-format-2.1.7.tar.gz) = b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4
|
||||
SIZE (biom-format-2.1.7.tar.gz) = 11820666
|
||||
|
|
|
@ -1,69 +0,0 @@
|
|||
# Created by: Glenn Johnson
|
||||
# $FreeBSD$
|
||||
|
||||
PORTNAME= tinker
|
||||
PORTVERSION= 7.1.3
|
||||
PORTREVISION= 5
|
||||
CATEGORIES= biology
|
||||
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
|
||||
|
||||
MAINTAINER= ports@FreeBSD.org
|
||||
COMMENT= General purpose molecular modelling package
|
||||
|
||||
LICENSE= tinker
|
||||
LICENSE_NAME= TINKER license agreement
|
||||
LICENSE_FILE= ${WRKSRC}/doc/license.txt
|
||||
LICENSE_PERMS= auto-accept
|
||||
|
||||
RESTRICTED= author requests no distribution except from his FTP site
|
||||
|
||||
OPTIONS_DEFINE= OPTIMIZED_FFLAGS DOCS EXAMPLES
|
||||
OPTIMIZED_FFLAGS_DESC= compilation optimizations
|
||||
|
||||
WRKSRC= ${WRKDIR}/${PORTNAME}
|
||||
BUILD_WRKSRC= ${WRKSRC}/source
|
||||
INSTALL_WRKSRC= ${WRKSRC}/source
|
||||
|
||||
USES= fortran
|
||||
MAKE_ENV= HAVE_G2C=yes
|
||||
MAKEFILE= ${WRKSRC}/make/Makefile
|
||||
ALL_TARGET= all
|
||||
INSTALL_TARGET= rename
|
||||
EXTRACT_AFTER_ARGS=--exclude fftw --exclude windows --exclude macosx
|
||||
|
||||
USE_HARDENING= pie:off relro:off
|
||||
|
||||
SUB_FILES= pkg-message
|
||||
|
||||
.include <bsd.port.options.mk>
|
||||
|
||||
.if ${PORT_OPTIONS:MOPTIMIZED_FFLAGS}
|
||||
FFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations
|
||||
.if (${ARCH} == "i386")
|
||||
FFLAGS+= -mfancy-math-387 -malign-double
|
||||
.endif # i386
|
||||
.endif
|
||||
|
||||
pre-build:
|
||||
@${RM} ${BUILD_WRKSRC}/*.c
|
||||
|
||||
post-install:
|
||||
${MKDIR} ${STAGEDIR}${DATADIR}
|
||||
${MKDIR} ${STAGEDIR}${DATADIR}/bench
|
||||
(cd ${WRKSRC}/bench && ${INSTALL_DATA} \
|
||||
0README *.log *.key *.run *.xyz results* \
|
||||
${STAGEDIR}${DATADIR}/bench)
|
||||
${MKDIR} ${STAGEDIR}${DATADIR}/params
|
||||
(cd ${WRKSRC}/params && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}/params)
|
||||
${MKDIR} ${STAGEDIR}${DATADIR}/test
|
||||
(cd ${WRKSRC}/test && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}/test)
|
||||
post-install-DOCS-on:
|
||||
${MKDIR} ${STAGEDIR}${DOCSDIR}
|
||||
(cd ${WRKSRC}/doc && ${INSTALL_DATA} 0README *.pdf *.txt ${STAGEDIR}${DOCSDIR})
|
||||
post-install-EXAMPLES-on:
|
||||
${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
|
||||
(cd ${WRKSRC}/example && ${INSTALL_DATA} \
|
||||
0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.xyz \
|
||||
${STAGEDIR}${EXAMPLESDIR})
|
||||
|
||||
.include <bsd.port.mk>
|
|
@ -1,2 +0,0 @@
|
|||
SHA256 (tinker-7.1.3.tar.gz) = c221459ac1ac423ed8c99c7ba67eaab09821c970333cd2841efb20ccbfd59095
|
||||
SIZE (tinker-7.1.3.tar.gz) = 28655947
|
|
@ -1,5 +0,0 @@
|
|||
--- bench/bench1.run.orig 2015-05-08 20:57:45 UTC
|
||||
+++ bench/bench1.run
|
||||
@@ -1 +1 @@
|
||||
-../bin/timer bench1 100 y
|
||||
+timer bench1 1 y
|
|
@ -1,5 +0,0 @@
|
|||
--- bench/bench2.run.orig 2015-05-08 20:57:45 UTC
|
||||
+++ bench/bench2.run
|
||||
@@ -1 +1 @@
|
||||
-../bin/timer bench2 1000 y
|
||||
+timer bench2 1 y
|
|
@ -1,5 +0,0 @@
|
|||
--- bench/bench3.run.orig Wed Sep 5 14:00:09 2001
|
||||
+++ bench/bench3.run Wed Sep 5 14:01:27 2001
|
||||
@@ -1 +1 @@
|
||||
-time ../bin/vibrate bench3 0
|
||||
+time vibrate bench3 0
|
|
@ -1,5 +0,0 @@
|
|||
--- bench/bench4.run.orig 2014-12-16 05:17:53.000000000 +0200
|
||||
+++ bench/bench4.run 2014-12-28 18:56:02.000000000 +0200
|
||||
@@ -1 +1 @@
|
||||
-time ../bin/dynamic bench4 1000 1.0 10.0 2 298.0
|
||||
+time dynamic bench4 1000 1.0 10.0 2 298.0
|
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue